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Report for CCDS39635.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39635.1 Public Mus musculus 6 Iffo1 23 108 98 CCDS HistoryNCBI Gene:320678Re-query CCDS DB by CCDS ID:39635.1Re-query CCDS DB by GeneID:320678See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39635.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119527.7 ENSMUSP00000113376.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119527.7Link to Ensembl Protein Viewer:ENSMUSP00000113376.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000119527Re-query CCDS DB by Protein ID:ENSMUSP00000113376
Original member Current member NCBI NM_178787.6 NP_848902.4 Accepted alive Link to Nucleotide Sequence:NM_178787.6Link to Protein Sequence:NP_848902.4Re-query CCDS DB by Nucleotide ID:NM_178787Re-query CCDS DB by Protein ID:NP_848902Link to BLAST:NP_848902.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848902.4 559 Q8BXL9-5 559 100% 0 0

Chromosomal Locations for CCDS 39635.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 125145257 125146029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125149589 125149649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125149741 125149836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125151385 125151525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125152614 125152771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125153042 125153162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125153410 125153502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125159062 125159192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125160533 125160638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1680 nt):
ATGAATCCGTTATTTGGTCCCAACCTCTTCCTCCTACAGCAGGAGCAGCAAGGCTTGGCCGGGCCGCTGG
GGGACCCTCTGGGAGGTGACCACTTTGCCGGGGGAGGGGACTTAGCCTCGGCTCCGCTTGCCTCGGCCGG
CCCCTCTGCCTATTCGCCTCCGGGGCCTGGTCCGGCGCCCCCCGCAGCCATGGCTCTCCGCAACGACCTA
GGCTCCAACATCAACGTACTGAAGACCCTGAACCTCCGGTTTCGCTGCTTCCTAGCCAAGGTGCACGAGC
TAGAGCGCCGAAATCGGCTGCTGGAGAAACAGCTGCAGCAGGCTCTAGAGGAGGGTAAGCAGGGCAGGCG
GGGCCTGGCCCGCCGTGACCAGGCGGTACAGACCGGCTTCATCAGCCCGATCCGGCCCCTGGGGCTGCCC
CTGAGCTCCCGGCCGGCCGCCGTGTGCCCCCCATCAGCGCGGGTGCTGGGCTCGCCCTCCCGCTCGCCAG
CTGGACCCTTAGCATCCTCTGCCGCCTGCCACACATCATCCTCCACTTCCACATCCACTGCCTTCTCCTC
GTCGACCCGCTTCATGCCTGGCACCATCTGGTCCTTCTCTCACGCCCGCCGGCTTGGACCAGGACTGGAA
CCCACGCTGGTGCAAGGGCCTGGCCTGTCGTGGGTACACCCTGACGGGGTGGGCGTCCAGATCGACACCA
TCACCCCTGAGATCCGTGCCCTGTACAACGTGCTGGCCAAAGTGAAGCGGGAGCGGGACGAGTACAAGCG
AAGGTGGGAAGAGGAATACACGGTTCGGATACAGCTACAAGAGCGAGTGACTGAGCTCCAGGAGGAGGCC
CAAGAGGCCGATGCCTGCCAAGAGGAGCTAGCCATGAAGGTTGAGCAGCTGAAGGCAGAGCTGGTGGTCT
TCAAGGGGCTCATGAGTAATAATCTGACAGAGCTGGACACCAAGATCCAGGAAAAGGCCATGAAAGTCGA
CATGGACATCTGCCGCCGCATTGACATCACGGCCAAGCTCTGTGACTTGGCCCAGCAGCGCAACTGTGAG
GATATGATCCAGATGTTCCAGGTCCCGTCCATGGGGGGGCGGAAGCGGGAGCGCAAGGCTGCTGTGGAGG
AGGACACCTCCCTGTCGGAGAGTGATGGGCCCCGCCAGCCTGAGGGTGCCGAGGAGGAGAGCACAGCCCT
CAGCATCAACGAGGAGATGCAGCGCATGCTCAGCCAGCTGAGGGAGTATGATTTTGAGGACGACTGTGAC
AGCCTGACTTGGGAGGAGACTGAGGAGACCTTGCTACTTTGGGAGGATTTCTCAGGCTATGCCATGGCAG
CCGCAGAGGCCCAGGGAGAGCAGGAGGACAGCCTGGAGAAGGTGATCAAAGACACGGAGTCCCTGTTCAA
AACCCGGGAGAAGGAGTACCAGGAGACCATTGACCAGATAGAGCTGGAGCTGGCCACAGCCAAGAACGAC
ATGAACCGACACCTGCATGAGTACATGGAGATGTGCAGCATGAAGCGGGGCCTGGACGTGCAGATGGAGA
CCTGCCGCCGGCTCATCACACAGTCCGGGGACCGAAAGTCTCCTGCTTTCACTGCGGTCCCGCTTAGCGA
CCCGCCGCCACCGCCGAGTGAGACTGAGGACTCCGATCGAGACGTCTCATCTGATAGCTCCATGAGATAG

Translation (559 aa):
MNPLFGPNLFLLQQEQQGLAGPLGDPLGGDHFAGGGDLASAPLASAGPSAYSPPGPGPAPPAAMALRNDL
GSNINVLKTLNLRFRCFLAKVHELERRNRLLEKQLQQALEEGKQGRRGLARRDQAVQTGFISPIRPLGLP
LSSRPAAVCPPSARVLGSPSRSPAGPLASSAACHTSSSTSTSTAFSSSTRFMPGTIWSFSHARRLGPGLE
PTLVQGPGLSWVHPDGVGVQIDTITPEIRALYNVLAKVKRERDEYKRRWEEEYTVRIQLQERVTELQEEA
QEADACQEELAMKVEQLKAELVVFKGLMSNNLTELDTKIQEKAMKVDMDICRRIDITAKLCDLAQQRNCE
DMIQMFQVPSMGGRKRERKAAVEEDTSLSESDGPRQPEGAEEESTALSINEEMQRMLSQLREYDFEDDCD
SLTWEETEETLLLWEDFSGYAMAAAEAQGEQEDSLEKVIKDTESLFKTREKEYQETIDQIELELATAKND
MNRHLHEYMEMCSMKRGLDVQMETCRRLITQSGDRKSPAFTAVPLSDPPPPPSETEDSDRDVSSDSSMR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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