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Report for CCDS39625.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39625.1 Public Mus musculus 6 Clec4b1 23 108 98 CCDS HistoryNCBI Gene:69810Re-query CCDS DB by CCDS ID:39625.1Re-query CCDS DB by GeneID:69810See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39625.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077228.10 ENSMUSP00000076466.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077228.10Link to Ensembl Protein Viewer:ENSMUSP00000076466.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000077228Re-query CCDS DB by Protein ID:ENSMUSP00000076466
Original member Current member NCBI NM_027218.3 NP_081494.1 Accepted alive Link to Nucleotide Sequence:NM_027218.3Link to Protein Sequence:NP_081494.1Re-query CCDS DB by Nucleotide ID:NM_027218Re-query CCDS DB by Protein ID:NP_081494Link to BLAST:NP_081494.1

Chromosomal Locations for CCDS 39625.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 123050098 123050122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123050611 123050700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123068437 123068594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123069656 123069768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123071393 123071537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (531 nt):
ATGGTTCAGGAAAGACAGCTACAAGGGAAGGCAGTCTCCTGGTCCCTGAGACTCTGGTCAGCTGCTGTGA
TTTCTATCTTACTCCTCAGCACCTGTTTCATTGCGAGCTGTGTGGACAAAGTCTGGAGCTGTTGCCCAAA
GGATTGGAAGCTATTTGGTTCCCACTGCTACTTGGTTCCCACAGTTTTTTCATCAGCATCTTGGAACAAG
AGTGAGGAGAACTGCTCCCGCATGGGTGCTCATCTAGTGGTGATCCATAGCCAGGAGGAGCAGGATTTCA
TCACTGGGATCTTGGACATTCATGCTGCTTATTTTATAGGGTTGTGGGATACAGGCCATCGGCAATGGCA
ATGGGTTGATCAGACACCATATGAAGAAAGTGTCACATTCTGGCACAATGGTGAGCCCAGCAGTGACAAT
GAAAAATGTGTTACAGTATATTACCGTCGGAATATTGGATGGGGCTGGAATGATATCTCTTGCAATCTTA
AACAGAAGTCAGTTTGTCAGATGAAGAAAATAAACTTATGA

Translation (176 aa):
MVQERQLQGKAVSWSLRLWSAAVISILLLSTCFIASCVDKVWSCCPKDWKLFGSHCYLVPTVFSSASWNK
SEENCSRMGAHLVVIHSQEEQDFITGILDIHAAYFIGLWDTGHRQWQWVDQTPYEESVTFWHNGEPSSDN
EKCVTVYYRRNIGWGWNDISCNLKQKSVCQMKKINL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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