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Report for CCDS39560.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39560.1 Public Mus musculus 6 Vmn1r51 23 108 98 CCDS HistoryNCBI Gene:22296Re-query CCDS DB by CCDS ID:39560.1Re-query CCDS DB by GeneID:22296See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39560.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072859.5 ENSMUSP00000072637.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072859.5Link to Ensembl Protein Viewer:ENSMUSP00000072637.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000072859Re-query CCDS DB by Protein ID:ENSMUSP00000072637
Original member Current member EBI ENSMUST00000174204.2 ENSMUSP00000133870.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000174204.2Link to Ensembl Protein Viewer:ENSMUSP00000133870.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000174204Re-query CCDS DB by Protein ID:ENSMUSP00000133870
Original member Current member EBI ENSMUST00000226977.1 ENSMUSP00000153783.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226977.1Link to Ensembl Protein Viewer:ENSMUSP00000153783.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226977Re-query CCDS DB by Protein ID:ENSMUSP00000153783
Original member Current member EBI ENSMUST00000227766.1 ENSMUSP00000153813.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227766.1Link to Ensembl Protein Viewer:ENSMUSP00000153813.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227766Re-query CCDS DB by Protein ID:ENSMUSP00000153813
Original member Current member EBI ENSMUST00000227109.1 ENSMUSP00000153842.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227109.1Link to Ensembl Protein Viewer:ENSMUSP00000153842.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227109Re-query CCDS DB by Protein ID:ENSMUSP00000153842
Original member Current member EBI ENSMUST00000226542.1 ENSMUSP00000153862.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226542.1Link to Ensembl Protein Viewer:ENSMUSP00000153862.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226542Re-query CCDS DB by Protein ID:ENSMUSP00000153862
Original member Current member EBI ENSMUST00000227876.1 ENSMUSP00000154223.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227876.1Link to Ensembl Protein Viewer:ENSMUSP00000154223.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227876Re-query CCDS DB by Protein ID:ENSMUSP00000154223
Original member Current member EBI ENSMUST00000227911.1 ENSMUSP00000154582.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227911.1Link to Ensembl Protein Viewer:ENSMUSP00000154582.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227911Re-query CCDS DB by Protein ID:ENSMUSP00000154582
Original member Current member EBI ENSMUST00000228880.1 ENSMUSP00000154676.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228880.1Link to Ensembl Protein Viewer:ENSMUSP00000154676.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228880Re-query CCDS DB by Protein ID:ENSMUSP00000154676
Original member Current member NCBI NM_011683.2 NP_035813.2 Accepted alive Link to Nucleotide Sequence:NM_011683.2Link to Protein Sequence:NP_035813.2Re-query CCDS DB by Nucleotide ID:NM_011683Re-query CCDS DB by Protein ID:NP_035813Link to BLAST:NP_035813.2

Chromosomal Locations for CCDS 39560.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 90129104 90130093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (990 nt):
ATGATGAGGGGAGCAGAGTTGCCAGGAGTTATGAATGAGATTCTGTTCTTTTCTCCTCAGCCACTGTTCT
CACATATGATGAATGAGAACAGCAGGGTACACACTCATTCTAACTTAAGGCACATCTTTTTCTCCGAAAT
TGGCATTGGGATCTCAGGCAATAGCTTCCTTCTTCTCTTCCACATCCTCAAGTTCATTCATGGGCACAGG
TCCAGACTCTCTGACCTGCCCATTGGTCTCTTGTCCCTAATCCACCTACTAATGCTACTGGTCATGGCAT
TCATAGCCACAGACATTTTTATTTCTTGGAGGGGTTGGGATGACATCATATGTAAATTCCTTGTGTACCT
GTACAGAGTTTTGAGGGGTCTCTCCCTTTGTACCACCAGCATGTTGAGTGTCCTCCAGGCCATCATCCTC
AGTCCCAGAAGCTCCTGTTTAGCAAAGTTCAAGCGTAAATCTCTCCATCATATCTCATGTGCCATTCTTT
TCCTGAGTGTCCTCTATATGTTAATTGGCAGTCAACTCTTGGTATCCATCATTGCCACCCCAAATTTAAC
CACAAATGACTTTATTTATGTTACTCAGTCCTGCTCTATTCTACCCTTGAGTTACGTCATGCAAAGCATG
TTTTCTACTCTACTGGTCATCAGGGATGTCTTTCTTATTAGTCTCATGGTTCTCTCAACTTGGTACATGG
TAGCCCTCTTGTGTAGGCACAGGAAAAAGACCCAGCATCTGCAAGGTATCAGCCTTTCCCCCAAAACATC
CCCAAAGCAAAGAGCTACCCAGACCCTCCTGATGCTCATGAGCTTCTTTGTGCTGATGACCATCTATGAC
ACTATTGTCTCCTGCTCAAGAACTATGTTCCTGAATGATCCAACATCTTACAATATGCAAATCTTTGTGG
TGCACATCTATGCCACAGTAAGCCCTTTTGTGTTTATGAGCACTGAAAAACATATAGTTAACTGTTTGAG
GTCTGTATGA

Translation (329 aa):
MMRGAELPGVMNEILFFSPQPLFSHMMNENSRVHTHSNLRHIFFSEIGIGISGNSFLLLFHILKFIHGHR
SRLSDLPIGLLSLIHLLMLLVMAFIATDIFISWRGWDDIICKFLVYLYRVLRGLSLCTTSMLSVLQAIIL
SPRSSCLAKFKRKSLHHISCAILFLSVLYMLIGSQLLVSIIATPNLTTNDFIYVTQSCSILPLSYVMQSM
FSTLLVIRDVFLISLMVLSTWYMVALLCRHRKKTQHLQGISLSPKTSPKQRATQTLLMLMSFFVLMTIYD
TIVSCSRTMFLNDPTSYNMQIFVVHIYATVSPFVFMSTEKHIVNCLRSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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