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Report for CCDS39548.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39548.1 Public Mus musculus 6 Isy1 23 108 98 CCDS HistoryNCBI Gene:57905Re-query CCDS DB by CCDS ID:39548.1Re-query CCDS DB by GeneID:57905See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39548.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089497.6 ENSMUSP00000086923.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089497.6Link to Ensembl Protein Viewer:ENSMUSP00000086923.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000089497Re-query CCDS DB by Protein ID:ENSMUSP00000086923
Original member NCBI NM_133934.4 NP_598695.1 Updated not alive Link to Nucleotide Sequence:NM_133934.4Link to Protein Sequence:NP_598695.1Re-query CCDS DB by Nucleotide ID:NM_133934Re-query CCDS DB by Protein ID:NP_598695
Current member NCBI NM_133934.5 NP_598695.1 Accepted alive Link to Nucleotide Sequence:NM_133934.5Link to Protein Sequence:NP_598695.1Re-query CCDS DB by Nucleotide ID:NM_133934Re-query CCDS DB by Protein ID:NP_598695Link to BLAST:NP_598695.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598695.1 285 Q69ZQ2 285 100% 0 0

Chromosomal Locations for CCDS 39548.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 87819096 87819203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87819557 87819643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87821508 87821629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87822340 87822462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87825371 87825488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87827584 87827696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87833642 87833684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87834428 87834493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87834943 87834994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87835728 87835750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87838644 87838646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (858 nt):
ATGGCCCGAAATGCAGAAAAAGCCATGACTGCCCTGGCGAGGTTTCGTCAAGCTCAGCTGGAAGAGGGAA
AAGTCAAGGAACGGAGACCCTTCCTTGCTTCTGAATGTACTGAGTTGCCGAAAGCGGAGAAGTGGAGACG
GCAGATCATTGGCGAGATCTCAAAAAAGGTTGCTCAGATTCAGAATGCTGGCTTAGGGGAATTCCGAATT
CGGGACCTGAATGACGAAATTAACAAGCTGCTGAGGGAGAAAGGACACTGGGAGGTCCGCATCAAGGAGC
TGGGCGGTCCTGATTATGGAAAAGTTGGCCCCAAGATGCTGGATCATGAAGGTAAAGAAGTCCCAGGAAA
TCGAGGTTACAAGTACTTTGGGGCAGCAAAAGATTTGCCTGGTGTCAGAGAGCTATTTGAGAAAGAACCC
CTTCCTCCTCCCAGAAAGACACGTGCTGAGCTCATGAAGGCCATCGATTTTGAGTACTATGGTTACCTGG
ATGAAGATGATGGAGTTATTGTGCCCTTGGAACAAGAGTATGAGAAGAAACTCAGAGCTGAGCTGGTGGA
AAAATGGAAGGCAGAGAGAGAAGCTCGGCTGGCAAGGGGAGAAAAGGAAGAGGAGGAGGAGGAGGAAGAG
GAGATCAACATCTATGCTGTCACGGAGGAGGAGTCTGATGAGGAAGGCAACCAGGAGAAGGCCGGGGAAG
ATGGTCAGCAGAAGTTCATTGCTCATGTGCCGGTGCCATCTCAGCAGGAGATTGAGGAGGCGCTTGTACG
GAGGAAGAAAATGGAACTGCTCCAGAAATATGCAAGTGAGACCCTGCAGGCACAGAGTGAAGAAGCCAAG
CGACTCCTGGGGTACTAG

Translation (285 aa):
MARNAEKAMTALARFRQAQLEEGKVKERRPFLASECTELPKAEKWRRQIIGEISKKVAQIQNAGLGEFRI
RDLNDEINKLLREKGHWEVRIKELGGPDYGKVGPKMLDHEGKEVPGNRGYKYFGAAKDLPGVRELFEKEP
LPPPRKTRAELMKAIDFEYYGYLDEDDGVIVPLEQEYEKKLRAELVEKWKAEREARLARGEKEEEEEEEE
EINIYAVTEEESDEEGNQEKAGEDGQQKFIAHVPVPSQQEIEEALVRRKKMELLQKYASETLQAQSEEAK
RLLGY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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