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Report for CCDS39508.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39508.1 Public Mus musculus 6 Rnf103 23 108 98 CCDS HistoryNCBI Gene:22644Re-query CCDS DB by CCDS ID:39508.1Re-query CCDS DB by GeneID:22644See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39508.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064637.10 ENSMUSP00000066324.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064637.10Link to Ensembl Protein Viewer:ENSMUSP00000066324.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000064637Re-query CCDS DB by Protein ID:ENSMUSP00000066324
Original member Current member EBI ENSMUST00000114179.2 ENSMUSP00000109817.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114179.2Link to Ensembl Protein Viewer:ENSMUSP00000109817.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114179Re-query CCDS DB by Protein ID:ENSMUSP00000109817
Original member NCBI NM_009543.3 NP_033569.2 Updated not alive Link to Nucleotide Sequence:NM_009543.3Link to Protein Sequence:NP_033569.2Re-query CCDS DB by Nucleotide ID:NM_009543Re-query CCDS DB by Protein ID:NP_033569
Current member NCBI NM_009543.4 NP_033569.2 Accepted alive Link to Nucleotide Sequence:NM_009543.4Link to Protein Sequence:NP_033569.2Re-query CCDS DB by Nucleotide ID:NM_009543Re-query CCDS DB by Protein ID:NP_033569Link to BLAST:NP_033569.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033569.2 683 Q9R1W3 683 100% 0 0

Chromosomal Locations for CCDS 39508.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 71494663 71494888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71496831 71496970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71505734 71505849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71508869 71510438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2052 nt):
ATGTGGCTGAAGCTGTTTTTCTTGCTCCTGTATTTCCTGGTCCTGTTCGTCCTGGCCAGGTTTTTTGAGG
CCATTGTGTGGTACGAGACTGGCATCTTTGCTACTCAGCTGGTGGATCCGGTGGCATTGAGCTTCAAGAA
GCTGAAGACCATTCTGGAGTGTCGAGGGCTGGGCTACTCCGGGCTGCCGGAGAAGAAAGATGTTCGGGAG
CTGGTGGAGAAGTCAGGTGACTTGATGGAAGGTGAACTCTATTCTGCTCTTAAGGAAGAAGAGGCATCTG
AGTCTGTTTCTAGTACCAATTTCAGTGGTGAAATGCATTTCTATGAGCTTGTGGAAGACACAAAAGATGG
CATCTGGCTGGTTCAGGTCATAGCAAATGACAGAAGTCCTTTGGTGGGTAAAATCCACTGGGAGAAAATG
GTGAAAAAAGTGTCAAGATTTGGAATACGGACAGGCACTTTCAACTGTTCCAGTGATCCCAGGTACTGCA
GAAGGAGAGGCTGGGTGCGTTCCACACTCATCATGTCTGTGCCACAAACAAGTACATCTAAAGGGAAAGT
CATGCTTAAAGAGTACAGTGGACGCAAGATTGAAGTAGAGCACATTTTTAAGTGGATAACTGCCCATGCA
GCTTCTCGGATCAAAACTATATATAATGTGGAGCATTTGAAGGAAGAATGGAATAAAAGTGATCAATACT
GGGTAAAAATATACCTATTTGCAAACCTTGACCAACCGCCAGCTTTCTTCTCTGCATTAAGTATAAAATT
TACTGGAAGAGTTGAGTTTATTTTTGTTAATGTGGAAAATTGGAACAACAAGAGTTATATGACAGATATT
GGTATTTATAACATGCCATCATACATACTTAGAACTCCTGAAGGAATTTATAGATACGGAAACCACACAG
GTGAATTTATATCCCTTCAGGCCATGGATTCATTTCTGCGCTCATTACAACCTGAAGTAAATGATCTGTT
TGTTTTGAGTTTGGTTCTAGTTAATCTTATGGCTTGGATGGACTTATTTATTACACAAGGAGCAACCATC
AAGCGATTTGTGGTTCTCATAAGCACTTTAGGGACATACAATTCCCTATTAATTATTTCTTGGCTACCTG
TGTTGGGCTTTCTACAGCTCCCTTACTTAGATAGCTTTTATGACTATAGTTTAAGATTGCTGCGGTATTC
TAATACAACCACACTGGCTTCGTGGGTAAGGGCAGACTGGATGTTTTACACTTCACACCCAGCCCTGTTT
CTCAGTACATACCTTGGACATGGTTTGCTAATTGATTACTTTGAGAAGAAGAGACGTCGCAGCAACAATG
ATGAAGTTAATGCGAATAATTTAGAATGGTTATCAAGTCTGTGGGACTGGTACACCAGCTACCTCTTCCA
CCCGATTGCTTCTTTTCAGAACTTTCCTGTAGACTCTGATTGGGACGAAGACCCTGACTTATTCTTGGAA
CGGTTAGCTTTCCCTGACCTTTGGCTTCACCCTCTGATACCAACTGATTATATTAAAAACTTACCAATGT
GGCGATTTAAATGTCTTGGGGTTCAGTCTGAAGAAGAAATGTCAGAGAGTTCTCAAGACACTGAAAATGA
CTCGGATAGTGACAACATGGACACTTTTAGTAGTAGTAAGGATATATTTGAAGATAAACAAAGCGTTGTT
CACAGTTCTCCAGGAAGAACAAGTCACTGTGATACTGAGGCTTGTTCATGTGCCAATAAATGTGAGAGCA
GCCCATGTGAAAGGAAGAGGAGGTCGTATGGATCACATAATACTGATGAAGATATGGAACCGGACTGGTT
AACTTGGCCTGCGGGTACGCTGCACTGTACTGAATGTGTTGTTTGCCTTGAGAATTTTGAAAATGGATGT
TTGCTAATGGGGTTGCCTTGTGGTCACGTGTTTCACCAGAATTGCATTGTTATGTGGTTGGCTGGGGGCC
GACACTGTTGCCCTGTTTGTCGTTGGCCTTCATATAAGAAAAAGCAGCCATATGCACAACAACAGCCGTT
GTCAAATGATGTTCCATCTTAA

Translation (683 aa):
MWLKLFFLLLYFLVLFVLARFFEAIVWYETGIFATQLVDPVALSFKKLKTILECRGLGYSGLPEKKDVRE
LVEKSGDLMEGELYSALKEEEASESVSSTNFSGEMHFYELVEDTKDGIWLVQVIANDRSPLVGKIHWEKM
VKKVSRFGIRTGTFNCSSDPRYCRRRGWVRSTLIMSVPQTSTSKGKVMLKEYSGRKIEVEHIFKWITAHA
ASRIKTIYNVEHLKEEWNKSDQYWVKIYLFANLDQPPAFFSALSIKFTGRVEFIFVNVENWNNKSYMTDI
GIYNMPSYILRTPEGIYRYGNHTGEFISLQAMDSFLRSLQPEVNDLFVLSLVLVNLMAWMDLFITQGATI
KRFVVLISTLGTYNSLLIISWLPVLGFLQLPYLDSFYDYSLRLLRYSNTTTLASWVRADWMFYTSHPALF
LSTYLGHGLLIDYFEKKRRRSNNDEVNANNLEWLSSLWDWYTSYLFHPIASFQNFPVDSDWDEDPDLFLE
RLAFPDLWLHPLIPTDYIKNLPMWRFKCLGVQSEEEMSESSQDTENDSDSDNMDTFSSSKDIFEDKQSVV
HSSPGRTSHCDTEACSCANKCESSPCERKRRSYGSHNTDEDMEPDWLTWPAGTLHCTECVVCLENFENGC
LLMGLPCGHVFHQNCIVMWLAGGRHCCPVCRWPSYKKKQPYAQQQPLSNDVPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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