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Report for CCDS39488.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39488.1 Public Mus musculus 6 Npy 23 108 98 CCDS HistoryNCBI Gene:109648Re-query CCDS DB by CCDS ID:39488.1Re-query CCDS DB by GeneID:109648See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39488.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031843.6 ENSMUSP00000031843.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031843.6Link to Ensembl Protein Viewer:ENSMUSP00000031843.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000031843Re-query CCDS DB by Protein ID:ENSMUSP00000031843
Original member Current member NCBI NM_023456.3 NP_075945.1 Accepted alive Link to Nucleotide Sequence:NM_023456.3Link to Protein Sequence:NP_075945.1Re-query CCDS DB by Nucleotide ID:NM_023456Re-query CCDS DB by Protein ID:NP_075945Link to BLAST:NP_075945.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075945.1 97 P57774 97 100% 0 0

Chromosomal Locations for CCDS 39488.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 49823598 49823785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49827489 49827569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49829303 49829327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (294 nt):
ATGCTAGGTAACAAGCGAATGGGGCTGTGTGGACTGACCCTCGCTCTATCTCTGCTCGTGTGTTTGGGCA
TTCTGGCTGAGGGGTACCCCTCCAAGCCGGACAATCCGGGCGAGGACGCGCCAGCAGAGGACATGGCCAG
ATACTACTCCGCTCTGCGACACTACATCAATCTCATCACCAGACAGAGATATGGCAAGAGATCCAGCCCT
GAGACACTGATTTCAGACCTCTTAATGAAGGAAAGCACAGAAAACGCCCCCAGAACAAGGCTTGAAGACC
CTTCCATGTGGTGA

Translation (97 aa):
MLGNKRMGLCGLTLALSLLVCLGILAEGYPSKPDNPGEDAPAEDMARYYSALRHYINLITRQRYGKRSSP
ETLISDLLMKESTENAPRTRLEDPSMW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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