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Report for CCDS39426.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39426.1 Public Mus musculus 6 Nxph1 23 108 98 CCDS HistoryNCBI Gene:18231Re-query CCDS DB by CCDS ID:39426.1Re-query CCDS DB by GeneID:18231See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 39426.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060369.3 ENSMUSP00000060926.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060369.3Link to Ensembl Protein Viewer:ENSMUSP00000060926.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000060369Re-query CCDS DB by Protein ID:ENSMUSP00000060926
Original member Current member EBI ENSMUST00000160300.1 ENSMUSP00000125274.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160300.1Link to Ensembl Protein Viewer:ENSMUSP00000125274.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160300Re-query CCDS DB by Protein ID:ENSMUSP00000125274
Original member Current member NCBI NM_008751.5 NP_032777.3 Accepted alive Link to Nucleotide Sequence:NM_008751.5Link to Protein Sequence:NP_032777.3Re-query CCDS DB by Nucleotide ID:NM_008751Re-query CCDS DB by Protein ID:NP_032777Link to BLAST:NP_032777.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032777.3 271 Q61200 271 100% 0 0

Chromosomal Locations for CCDS 39426.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 8950254 8950307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 9247085 9247846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (816 nt):
ATGCAGGCTGCGTGCTGGTACGTTCTTCTCCTCCTGCAGCCCACCGTCTACTTGGTCACGTGTGCCAACC
TAACAAATGGTGGGAAATCGGAACTACTGAAGTCAGGGAGCAGCAAATCCACGCTAAAGCACATATGGAC
AGAAAGCAGCAAAGACTTGTCTATCAGTCGGCTCCTCTCACAGACTTTCCGTGGTAAAGAAAATGACACA
GATTTGGACCTGCGCTATGACACCCCAGAACCTTATTCTGAGCAAGACCTCTGGGACTGGCTGAGGAACT
CCACAGATCTTCAGGAGCCTCGGCCCAGGGCCAAAAGACGGCCCATTGTTAAAACTGGCAAGTTTAAGAA
AATGTTTGGATGGGGTGATTTTCATTCCAACATCAAAACAGTGAAGCTAAACCTGTTGATAACTGGGAAA
ATTGTAGATCACGGCAATGGAACCTTTAGTGTATATTTCAGGCATAACTCCACTGGTCAAGGGAATGTAT
CTGTCAGCTTGGTGCCCCCAACAAAAATCGTGGAATTCGATTTGGCACAACAAACCGTGATTGATGCTAA
AGATTCCAAGTCCTTCAACTGTCGCATTGAGTATGAGAAGGTTGACAAGGCCACCAAGAACACACTCTGC
AACTACGACCCTTCAAAAACCTGTTACCAGGAGCAGACCCAAAGTCACGTGTCCTGGCTCTGCTCTAAGC
CCTTCAAGGTGATCTGTATTTACATTTCCTTTTATAGTACAGACTATAAACTAGTACAGAAGGTATGCCC
TGACTACAACTATCACAGTGACACACCTTACTTTCCCTCCGGATGA

Translation (271 aa):
MQAACWYVLLLLQPTVYLVTCANLTNGGKSELLKSGSSKSTLKHIWTESSKDLSISRLLSQTFRGKENDT
DLDLRYDTPEPYSEQDLWDWLRNSTDLQEPRPRAKRRPIVKTGKFKKMFGWGDFHSNIKTVKLNLLITGK
IVDHGNGTFSVYFRHNSTGQGNVSVSLVPPTKIVEFDLAQQTVIDAKDSKSFNCRIEYEKVDKATKNTLC
NYDPSKTCYQEQTQSHVSWLCSKPFKVICIYISFYSTDYKLVQKVCPDYNYHSDTPYFPSG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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