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Report for CCDS39414.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39414.1 Public Mus musculus 6 Hepacam2 23 108 98 CCDS HistoryNCBI Gene:101202Re-query CCDS DB by CCDS ID:39414.1Re-query CCDS DB by GeneID:101202See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39414.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049985.14 ENSMUSP00000058882.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049985.14Link to Ensembl Protein Viewer:ENSMUSP00000058882.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000049985Re-query CCDS DB by Protein ID:ENSMUSP00000058882
Original member NCBI NM_178899.5 NP_849230.1 Updated not alive Link to Nucleotide Sequence:NM_178899.5Link to Protein Sequence:NP_849230.1Re-query CCDS DB by Nucleotide ID:NM_178899Re-query CCDS DB by Protein ID:NP_849230
Current member NCBI NM_178899.6 NP_849230.1 Accepted alive Link to Nucleotide Sequence:NM_178899.6Link to Protein Sequence:NP_849230.1Re-query CCDS DB by Nucleotide ID:NM_178899Re-query CCDS DB by Protein ID:NP_849230Link to BLAST:NP_849230.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_849230.1 463 Q4VAH7 463 100% 0 0

Chromosomal Locations for CCDS 39414.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 3457913 3457916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3463261 3463370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3466124 3466197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3467389 3467426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3467514 3467538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3467624 3467749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3475909 3476205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3483290 3483574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3486923 3487276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3494400 3494478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1392 nt):
ATGGGACAGGATGCTTTTATGGAGCTTCTCAGAAGCATGGTTGGGCTCTCTCTTTGCAAAATACACCTTC
TTCTTATAGCAGGTTCTTGTCTGGGACTGAAGGTGACCGTGCCGTCATACACTGTCCACGGCATCAGGGG
ACAGGCCCTCTACCTTCCAGTGCACTATGGCTTCCACACTCCAGCATCTGACATCCAGATCATATGGCTG
TTTGAAAGATCCCACACAATGCCCAAATACTTGCTAGGCTCCGTTAATAAGTCTGTGGTTCCTGACTTGG
AATACCAGCACAAGTTCACCATGATGCCACCCAATGCATCTCTGCTCATCAACCCGCTGCAGTTCACCGA
TGAGGGCAATTACATCGTGAAGGTCAACATCCAGGGGAATGGAACTCTGTCTGCAAGTCAGAAGATACAA
GTCACTGTCGATGATCCTGTCATGAAGCCAATGGTTCAGTTCCATCCTGCTTCTGGGGCTGTTGAGTATG
TGGGCAACATTACCTTGACCTGCCAGGTAGAAGGAGGTACCAGGCTGGTTTACCAGTGGCGAAAAAGTGG
GAAACCCATTTCCATCAACTCCAGCCACTCTTTTTCTCCCCAAAACAACACCCTTTGGATTGTTCCAGTG
ACAAAAGAAGACATTGGAAACTACACCTGCCTCGTGTCAAACCCCGTCAGTGAGATGGAAAGTGATATCA
TTATGCCCACCATATATTATGGACCTTATGGACTTCAGGTTAATTCTGATAAAGGGCTAAAAGTGGGAGA
AGTATTCACTGTTGACCTGGGAGAAGCTGTCCTCTTTGACTGTTCAGCTGATTCTTATCCCCCTAACACC
TACTCCTGGATCCAAAGATCTGACAATACTACACATGTCATTAAGCATGGGCCTCATTTAGAAGTTGCAT
CTGAGAAAGTGGCCCAGAAGACAGCTGACTATGTGTGCTGTGCTTACAACAACATCACCGGAAGACGCGA
TGAAACTCGATTCACAGTCATCATAACTTCCGTAGGACTGGAGAAGCTTGCACAAAGGGGAAAATCCCTG
TCCCCACTAGCAAGTATAACTGGAATATCACTGTTTTTGATTATATCCATGTGCCTTCTTTTTCTGTGGA
AAAAATATCAACCTTACAAAGCTATAAGACAGAAGCTAGAAGGCAGACCAGAGTCAGAATACAGAAAAGC
TCAAACATTTTCAGGCCATGAAGATGCCCTGAGTGACTTCGGGATCTACGAGTTTGTGACTTTTCCGGAT
GCATCTGGTGTTTCCAGGATGTCAAGTAGGTCTTCCCCTGCCTCTGATGGTGTAACAGGGCAAGATATTC
ACGGAACAATTTATGAAGTCATTCAGCATATCCCAGAACAACAGCAAGAAAATACAGAGTGA

Translation (463 aa):
MGQDAFMELLRSMVGLSLCKIHLLLIAGSCLGLKVTVPSYTVHGIRGQALYLPVHYGFHTPASDIQIIWL
FERSHTMPKYLLGSVNKSVVPDLEYQHKFTMMPPNASLLINPLQFTDEGNYIVKVNIQGNGTLSASQKIQ
VTVDDPVMKPMVQFHPASGAVEYVGNITLTCQVEGGTRLVYQWRKSGKPISINSSHSFSPQNNTLWIVPV
TKEDIGNYTCLVSNPVSEMESDIIMPTIYYGPYGLQVNSDKGLKVGEVFTVDLGEAVLFDCSADSYPPNT
YSWIQRSDNTTHVIKHGPHLEVASEKVAQKTADYVCCAYNNITGRRDETRFTVIITSVGLEKLAQRGKSL
SPLASITGISLFLIISMCLLFLWKKYQPYKAIRQKLEGRPESEYRKAQTFSGHEDALSDFGIYEFVTFPD
ASGVSRMSSRSSPASDGVTGQDIHGTIYEVIQHIPEQQQENTE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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