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Report for CCDS39406.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39406.1 Public Mus musculus 5 Uspl1 23 108 98 CCDS HistoryNCBI Gene:231915Re-query CCDS DB by CCDS ID:39406.1Re-query CCDS DB by GeneID:231915See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39406.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100410.9 ENSMUSP00000097978.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100410.9Link to Ensembl Protein Viewer:ENSMUSP00000097978.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000100410Re-query CCDS DB by Protein ID:ENSMUSP00000097978
Original member Current member NCBI NM_001013378.2 NP_001013396.2 Accepted alive Link to Nucleotide Sequence:NM_001013378.2Link to Protein Sequence:NP_001013396.2Re-query CCDS DB by Nucleotide ID:NM_001013378Re-query CCDS DB by Protein ID:NP_001013396Link to BLAST:NP_001013396.2
Original member Current member NCBI NM_001359957.1 NP_001346886.1 Accepted alive Link to Nucleotide Sequence:NM_001359957.1Link to Protein Sequence:NP_001346886.1Re-query CCDS DB by Nucleotide ID:NM_001359957Re-query CCDS DB by Protein ID:NP_001346886Link to BLAST:NP_001346886.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013396.2 517 Q3ULM6-4 517 100% 0 0
NP_001346886.1 517 Q3ULM6-4 517 100% 0 0

Chromosomal Locations for CCDS 39406.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 149187775 149187876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149188345 149188473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149193840 149194440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149198645 149198758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149201760 149201889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149204269 149204394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149209643 149209800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149213352 149213522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149214023 149214045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1554 nt):
ATGACGGATGATTCTCTGAAGATTGGAAATGGTTTGCCACTGGTTGGACCAGGGACTGATGTAGGGATAT
CTTCACTCCCCATGCTGGGGTACTTGGGAAAAAATTATGCTTCAGCTAAAGTCACAACAGACGGGCATTG
CCCTGCTTGTAGAGCGAAAGGCAAGCTAAGTGCCTTAAAACCTTACCGCATTAGCTTCCAAGAATCTGTC
TTTCTGTGTGAGGATCTTCAGTGCATTTATCCTTTGGGCTCTGAGTCACTTACTAATTTAATTTCTCCTG
ATTCAGAAGATTGTCCCACTCCAAGTAAGCCTCAAAAACGAAAAAGATTGGAAACCAACTGTAGGAATTC
ACCTCTTCCAGTACATTCTAAAAAGACTAGAAGTCACATTGTCACTGATAGTGAACCAATTGTGAATGGT
AAATATAATGGAGAAGTGTGTGATGACTTCTCAGCAAGCTTCCCAGATACCAGTGCTCACCAGGATCCTG
CCAGCACAGCTGCTTCTGTGGAGCAGAGTGAGGCTTTGGAGGCTGATGATGTGGTTGTGGCCGCTACAGA
AGATCCTGCTACAGTTAGTGTCACATCTGAGCTGGAAATGCCAGCTAAGAGCAGATGTTTACCACTTTGC
CAGACTCTGTGTGTCCAGTGGAAAAACACCCAGGCCCTGTGCTGGTTAGACTGTATCCTGTCAGCCCTGG
TGCACTTGGAGGTGTTGAGGAAGACTGTGCTGGAGGCGTGCTCCAGGGAGGAGTGTGTATTTGGAAGGCT
GTTTGAAATGTACCACCAAGCAGATGAGCTGCTGCACACCCATCACCTGCATGGCGTCACAGGTGAAGAT
TGTAAAAAATTGACATCAGAAATATTTACAGAAATAGATACCTGTTTGAATAAAGTTAGAGATGAAATTT
TTGCTAAACTTCAACCGAAGCTTAGATGCACATTAGGTGACATGGAAAGTCCTGTGTTTGCACTTCCTGT
ACTGTTAAAGCTTGAACCCCATGTTGAAAGCCTCTTTACATATTCTTTTTCTTGGAATTTTGAATGTTCC
CATTGTGGACACCAGTACCAAAACAGGTGTGTGAAGAGTCTGGTCACCTTTACCAATATTGTTCCTGAGT
GGCATCCACTCAATGCTGCCCATTTTGGTCCATGTAACAGCTGCAACAGTAAATCACAAATAAGAAAAAT
GGTGTTGGAAAGAGCGTCGCCCATACTCATGCTGCACTTCGTGGAGGGCTTACCAAGGAGGGATTTGCAA
CACTATGCCTTCCACTTTGAAGGAAGCCTTTATCAAGTCACGTCGGTAATACAGTACCAAGCAAATAACC
ATTTTATAACATGGTTTTTAGATGCTGATGGGAGTTGGCTGGAGTGTGATGACCTAAAGGGTCCCTGTGC
TAAAAGGCACGTGACCTGTGAAGTGCCAGCTTCAGAGACACATATCGTTATTTGGGAAAGAAAATCCCAG
GTGCCAATTGAAGAAGCTGCCTGCCTTCCATGCATGAAGCCAAATGTGCAGCCTGTATCAGGAATTGAAG
TCCCTGGCAACTGA

Translation (517 aa):
MTDDSLKIGNGLPLVGPGTDVGISSLPMLGYLGKNYASAKVTTDGHCPACRAKGKLSALKPYRISFQESV
FLCEDLQCIYPLGSESLTNLISPDSEDCPTPSKPQKRKRLETNCRNSPLPVHSKKTRSHIVTDSEPIVNG
KYNGEVCDDFSASFPDTSAHQDPASTAASVEQSEALEADDVVVAATEDPATVSVTSELEMPAKSRCLPLC
QTLCVQWKNTQALCWLDCILSALVHLEVLRKTVLEACSREECVFGRLFEMYHQADELLHTHHLHGVTGED
CKKLTSEIFTEIDTCLNKVRDEIFAKLQPKLRCTLGDMESPVFALPVLLKLEPHVESLFTYSFSWNFECS
HCGHQYQNRCVKSLVTFTNIVPEWHPLNAAHFGPCNSCNSKSQIRKMVLERASPILMLHFVEGLPRRDLQ
HYAFHFEGSLYQVTSVIQYQANNHFITWFLDADGSWLECDDLKGPCAKRHVTCEVPASETHIVIWERKSQ
VPIEEAACLPCMKPNVQPVSGIEVPGN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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