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Report for CCDS39380.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39380.1 Public Mus musculus 5 Smurf1 23 108 98 CCDS HistoryNCBI Gene:75788Re-query CCDS DB by CCDS ID:39380.1Re-query CCDS DB by GeneID:75788See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39380.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085684.10 ENSMUSP00000082827.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085684.10Link to Ensembl Protein Viewer:ENSMUSP00000082827.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000085684Re-query CCDS DB by Protein ID:ENSMUSP00000082827
Original member Current member NCBI NM_001038627.1 NP_001033716.1 Accepted alive Link to Nucleotide Sequence:NM_001038627.1Link to Protein Sequence:NP_001033716.1Re-query CCDS DB by Nucleotide ID:NM_001038627Re-query CCDS DB by Protein ID:NP_001033716Link to BLAST:NP_001033716.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001033716.1 731 Q9CUN6 731 100% 0 0

Chromosomal Locations for CCDS 39380.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 144879357 144879456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144880625 144880709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144881618 144881819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144882507 144882627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144883569 144883706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144884583 144884761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144886362 144886476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144889699 144889802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144891315 144891513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144893161 144893307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144894474 144894558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144896490 144896731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144897983 144898058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144899147 144899212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144899365 144899498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144901177 144901285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144902540 144902578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144965501 144965555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2196 nt):
ATGTCGAACCCCGGGACCCGTAGGAACGGCTCCAGCATCAAGATCCGTCTGACAGTATTGTGTGCCAAGA
ACCTTGCAAAGAAAGACTTCTTCAGACTCCCCGACCCCTTTGCCAAGATTGTTGTGGACGGCTCTGGGCA
GTGCCACTCAACCGACACTGTGAAAAACACCCTGGACCCAAAGTGGAACCAGCACTATGACCTGTATGTT
GGGAAAACGGACTCGATAACCATCAGTGTGTGGAACCACAAGAAGATCCACAAGAAGCAGGGGGCTGGCT
TCCTGGGCTGTGTGCGGCTGCTCTCCAATGCCATCAGCAGATTGAAAGACACTGGCTACCAGCGTTTGGA
TCTATGCAAACTAAATCCCTCAGATACTGATGCAGTTCGTGGCCAAATAGTGGTCAGTTTACAGACCCGA
GACAGAATAGGCGGTGGAGGGTCAGTGGTGGACTGCAGAGGGCTGCTGGAGAACGAAGGAACAGTGTATG
AAGACTCAGGCCCTGGAAGGCCGCTCAGCTGCCTCATGGAGGAACCTGCCCCATATACAGATGGTACTGG
TGCAGCAGCAGGAGGCGGGAACTGCAGGTTTGTGGAGTCTCCAAGCCAAGATCAGAGACTCCTGGTACAG
CGACTCCGAAATCCTGAGGTTCGAGGGCCCTTACAGACACCCCAGAACCGACCACATGGCCACCAGTCGC
CAGAGCTGCCTGAAGGCTATGAGCAAAGGACAACAGTGCAGGGACAAGTTTACTTTTTGCACACGCAGAC
TGGAGTCAGTACATGGCATGACCCCAGGATCCCCAGAGACCTTAACAGTGTGAACTGCGATGAACTTGGG
CCACTGCCTCCAGGCTGGGAAGTCCGAAGCACAGTGTCGGGAAGAATCTATTTTGTAGATCACAATAATA
GGACAACCCAGTTTACAGATCCACGGCTTCACCACATCATGAATCACCAGTGCCAACTCAAGGAGCCCAG
CCAGCCGCTGCAGCTGCCCAGTGAGGGCTCCGTGGAGGACGAGGAGCTTCCTGCCCAGAGATATGAGAGG
GACTTAGTCCAGAAGCTCAAAGTTCTCAGGCACGAGCTCTCTCTTCAGCAGCCCCAGGCTGGTCACTGTC
GAATAGAAGTCTCCAGAGAAGAGATATTTGAGGAGTCGTATCGCCAGATCATGAAGATGCGGCCAAAAGA
CCTAAAGAAGCGCCTGATGGTGAAGTTCCGAGGGGAGGAAGGTTTGGACTATGGTGGAGTGGCTCGGGAG
TGGCTGTATTTGTTGTGCCATGAAATGTTGAACCCGTACTATGGACTCTTCCAGTATTCCACGGACAATA
TTTACACACTGCAGATCAACCCAGATTCTTCTATCAACCCTGACCATCTGTCATACTTCCACTTTGTGGG
TCGCATCATGGGTCTGGCTGTGTTCCACGGACACTACATAAATGGGGGTTTCACAGTTCCGTTCTACAAG
CAGCTCCTGGGGAAGCCAATCCAGCTGTCGGACCTGGAGTCCGTGGACCCAGAACTGCATAAGAGCTTGG
TGTGGATTCTAGAGAATGACATCACGCCTGTGTTGGATCATACCTTCTGCGTGGAGCACAACGCTTTCGG
GCGGATTCTCCAGCATGAACTGAAACCCAATGGCAGAAATGTGCCTGTCACTGAGGAGAACAAGAAGGAA
TACGTCCGGCTGTATGTGAACTGGAGGTTTATGAGAGGAATCGAAGCCCAGTTCTTAGCACTTCAGAAGG
GGTTTAACGAACTCATTCCCCAACACTTGCTGAAGCCCTTTGACCAGAAGGAACTAGAGCTGATAATAGG
TGGGCTGGATAAGATAGACCTGAACGACTGGAAGTCCAACACCCGGCTGAAACACTGTGTGGCAGACAGC
AACATCGTCAGGTGGTTCTGGCAGGCGGTGGAGACCTTCGATGAGGAGAGGAGAGCCAGACTCCTGCAGT
TTGTGACAGGATCCACAAGAGTTCCTCTCCAAGGCTTCAAGGCTCTGCAAGGCTCTACAGGCGCGGCAGG
GCCCCGGCTGTTCACCATTCACCTGATAGACGCCAATACAGACAACCTGCCCAAGGCCCATACCTGCTTT
AATCGGATCGACATCCCACCCTATGAGTCCTATGAGAAGCTCTATGAGAAGCTGCTGACAGCGGTGGAGG
AAACCTGTGGCTTTGCAGTGGAGTGA

Translation (731 aa):
MSNPGTRRNGSSIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYV
GKTDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQTR
DRIGGGGSVVDCRGLLENEGTVYEDSGPGRPLSCLMEEPAPYTDGTGAAAGGGNCRFVESPSQDQRLLVQ
RLRNPEVRGPLQTPQNRPHGHQSPELPEGYEQRTTVQGQVYFLHTQTGVSTWHDPRIPRDLNSVNCDELG
PLPPGWEVRSTVSGRIYFVDHNNRTTQFTDPRLHHIMNHQCQLKEPSQPLQLPSEGSVEDEELPAQRYER
DLVQKLKVLRHELSLQQPQAGHCRIEVSREEIFEESYRQIMKMRPKDLKKRLMVKFRGEEGLDYGGVARE
WLYLLCHEMLNPYYGLFQYSTDNIYTLQINPDSSINPDHLSYFHFVGRIMGLAVFHGHYINGGFTVPFYK
QLLGKPIQLSDLESVDPELHKSLVWILENDITPVLDHTFCVEHNAFGRILQHELKPNGRNVPVTEENKKE
YVRLYVNWRFMRGIEAQFLALQKGFNELIPQHLLKPFDQKELELIIGGLDKIDLNDWKSNTRLKHCVADS
NIVRWFWQAVETFDEERRARLLQFVTGSTRVPLQGFKALQGSTGAAGPRLFTIHLIDANTDNLPKAHTCF
NRIDIPPYESYEKLYEKLLTAVEETCGFAVE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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