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Report for CCDS39363.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39363.1 Public Mus musculus 5 Mmd2 23 108 98 CCDS HistoryNCBI Gene:75104Re-query CCDS DB by CCDS ID:39363.1Re-query CCDS DB by GeneID:75104See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39363.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037048.8 ENSMUSP00000039357.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037048.8Link to Ensembl Protein Viewer:ENSMUSP00000039357.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000037048Re-query CCDS DB by Protein ID:ENSMUSP00000039357
Original member NCBI NM_175217.6 NP_780426.1 Updated not alive Link to Nucleotide Sequence:NM_175217.6Link to Protein Sequence:NP_780426.1Re-query CCDS DB by Nucleotide ID:NM_175217Re-query CCDS DB by Protein ID:NP_780426
Current member NCBI NM_175217.7 NP_780426.1 Accepted alive Link to Nucleotide Sequence:NM_175217.7Link to Protein Sequence:NP_780426.1Re-query CCDS DB by Nucleotide ID:NM_175217Re-query CCDS DB by Protein ID:NP_780426Link to BLAST:NP_780426.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780426.1 247 Q8R189 247 100% 0 0

Chromosomal Locations for CCDS 39363.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 142564738 142564941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142567865 142567934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142569466 142569567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142574797 142574871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142575186 142575346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142580181 142580262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142608558 142608607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (744 nt):
ATGTTCACTCTGGCCAGGCTGCTGGATTTCCAGAAAACCAAATATGCAAGGTTTATGAATGACCGAGTCC
CGGCGCACAAGAGGTACCAGCCCACTGAGTATGAACACGCAGCAAACTGTGCCACCCATGCTTTCTGGAT
CATTCCCAGCATCCTTGGCAGCTCCAACCTCTACTTCCTGTCCGATGACGACTGGGAGACCATATCTGCC
TGGATCTACGGCCTTGGCCTCTGTGGCCTCTTTGTGGTATCCACCATTTTCCACACAGTCTCATGGAAAA
AGAGCCACCTCAGGATGGTAGAGCACTGCCTGCACATGATCGACAGGATGGTGATCTACTTCTTCATTGC
CGCCTCCTATGCTCCTTGGCTGAACCTTCGGGAGCTGGGCCCCTGGGCCTCCCACATGCGCTGGCTGGTG
TGGATCATGGCCTCCATCGGTACCATCTATGTCTTTTTCTTCCATGAACGGTACAAGCTTGTGGAGCTGC
TTTGCTATGTGGTGATGGGTTTCTTCCCTGCCCTGGTCATCCTCTCCATGCCCAACACTGATGGCATCTG
GGAGCTGATGACAGGAGGGGCTTTCTACTGCCTGGGCATGGTGTTCTTTAAGAGTGATGGAAGAATTCCC
TTTGCCCATGCCATCTGGCACCTCTTTGTGGCATTTGGTGCTGGTACCCACTACTATGCCATCTGGAGGT
ACCTCTACCTGCCCAGCACACTGCAAACCAAGGTGTCCAAATGA

Translation (247 aa):
MFTLARLLDFQKTKYARFMNDRVPAHKRYQPTEYEHAANCATHAFWIIPSILGSSNLYFLSDDDWETISA
WIYGLGLCGLFVVSTIFHTVSWKKSHLRMVEHCLHMIDRMVIYFFIAASYAPWLNLRELGPWASHMRWLV
WIMASIGTIYVFFFHERYKLVELLCYVVMGFFPALVILSMPNTDGIWELMTGGAFYCLGMVFFKSDGRIP
FAHAIWHLFVAFGAGTHYYAIWRYLYLPSTLQTKVSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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