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Report for CCDS39337.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39337.1 Public Mus musculus 5 Mepce 23 108 98 CCDS HistoryNCBI Gene:231803Re-query CCDS DB by CCDS ID:39337.1Re-query CCDS DB by GeneID:231803See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39337.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031740.15 ENSMUSP00000031740.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031740.15Link to Ensembl Protein Viewer:ENSMUSP00000031740.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000031740Re-query CCDS DB by Protein ID:ENSMUSP00000031740
Original member NCBI NM_144913.3 NP_659162.3 Updated not alive Link to Nucleotide Sequence:NM_144913.3Link to Protein Sequence:NP_659162.3Re-query CCDS DB by Nucleotide ID:NM_144913Re-query CCDS DB by Protein ID:NP_659162
Current member NCBI NM_144913.4 NP_659162.3 Accepted alive Link to Nucleotide Sequence:NM_144913.4Link to Protein Sequence:NP_659162.3Re-query CCDS DB by Nucleotide ID:NM_144913Re-query CCDS DB by Protein ID:NP_659162Link to BLAST:NP_659162.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659162.3 666 Q8K3A9 666 100% 0 0

Chromosomal Locations for CCDS 39337.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 137782432 137782484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137782595 137782721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137783130 137783348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137784461 137786062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2001 nt):
ATGATCGAGATGGCGGCGGAGAAGGAGCCCTTTCTGGTGCCGGCCCCGCCGCCGCCGCTCAAAGATGAGT
CGGGCGGAGGGGGCGGCCCCGAGGTGCAATCGCACCAAGAGGCTGCCTCCGGGGAGCTCCGTGATGGGAC
AGAACACGGGCCGGGCCCTCGCGCGCACTCGGCCGGGGCCGCAGCCAGCGGAGGGGGCGGCCCCCAGGCA
CAGGCGCACGGGGAGCCCCACGGGCGAGCCGCCGCTCCTGCGGACGTGGGGGAGGAGCGCCGGGGAGGGG
GCGGGACGGACCTGGGTCCCCCAGCCCCTCCTCGACCTCGCAATGGCTACCAGCCCCACCGACCCCCTGG
GGGTGGTGGGGGCAAAAGAAGAAATAGCTGTAACGTGGGGGGAGGGAGCGGTGGAAGCTTCAAACATCCG
GCCTTCAAGAGGCGCCGGCGAGTGAATTCAGACTGCGACTCTGTGTTACCATCCAATTTCCTTCTGGGGG
GTAACATATTTGATCCACTGAACCTGAATAGCCTCCTGGATGAGGAAGTGAGTCGCGCACTCAATGCGGA
GACCCCAAAGTCATCCCCACTTCCGGCCAAGGGGCGAGACCCTGTGGAGATCCTCATCCCCAAAGATATT
ACTGACCCGCTCAGTCTCAACACTTGCACTGACGAGGCCCATGTAGTGCTTGCCTCACCACTCAAGATTG
GTCGCAAGCGCCATAGACACCGGGGACCGCACCACCAGCAGCAGCAGCAGGCGTCTGGAGGGAATGATAG
CAACGCCGCCGTGCTGCCCACTGACCCTCTCACGCCCTCACTCCATGGGGAGGGTGCTACGCAGCAGCAG
CAAAACAGAGGCCAGAACCGTGATGCCCCTCAACCCTATGAACTCAACACAGCCATCAACTGCAGGGATG
AAGTTGTGTCTCCCCTTCCATCTGCCCTGCAGGGTTCCTCAGGCTCCCTTTCTGCCCCTCCAGCTGCCTC
AGTTACCTCTGCACCCTCTACTTCTTCCTCCTCCCGACATCGCAAACGTCGCAGGACTTCCAGCAAGTCA
GAGGCAGGGGCTAGGGGTGGAAGCCAGGGTTCCAAGGAAAAGGGCAGAGGGAGTGGAGGAGGCCGTCACC
ACCACCACCCACTACCTGCAACTGGCTTCAAAAAGCAACAGCTAAAGTTCCAATATGGGAATTACTGCAA
GTACTATGGCTATCGCAATCCTTCCTGTGAGGACGTGCGCCTTAGGGTGTTGAAGCCCGAGTGGTTTCAA
GGCCGGGACGTCCTAGATCTGGGCTGCAACGTTGGCCATCTGACCCTAAGTATTGCCTGCAAGTGGGGCC
CAGCCCGCATGGTGGGGCTGGACATTGATCCACGGCTTATCCACTCTGCTCGCCAAAATATCCGACACTA
CCTGTCGGAGGAGCTTCGTCTCCAAGCTCAGACTTCTGAGGGGGACCCAGGGACAGAGGGGGAGGAAGGG
ACTATCACTGTCCGAAAAAGGAGCTGCTTCCCAGCCTCACTGACAGCCAGCCGGGGTCCCATCGCTGCAC
CCCAAGTGCCCTTGGATGGAGCGGACACATCTGTCTTCCCCAACAATGTCGTCTTCGTCACGGGTAACTA
TGTCCTGGACCGAGATGAGCTGGTGGATGCCCAAAGACCGGAGTATGATGTGGTGCTGTGCTTCAGCCTC
ACCAAGTGGGTGCACCTGAACTGGGGTGATGAGGGGCTGAAGAGAATGTTCCGCCGCATCTACCGGCACC
TGCGCCCTGGGGGTATTCTGGTCCTGGAGCCCCAACCATGGTCCTCCTACTGCAAGAGAAAGTCTCTCAC
GGAAACAATCTATAAGAACTACTTTCGAATCCAGTTGAAGCCAGAACAGTTCAGTTCCTACCTGACATCC
CCAGAGGTGGGTTTCTCCAGCTATGAGCTTGTGGCCACACCGAATAACACCTCCAGAGGCTTCCAGCGTC
CTGTGTACTTGTTCCACAAGGCTCGATCCCCCAGCCACTAA

Translation (666 aa):
MIEMAAEKEPFLVPAPPPPLKDESGGGGGPEVQSHQEAASGELRDGTEHGPGPRAHSAGAAASGGGGPQA
QAHGEPHGRAAAPADVGEERRGGGGTDLGPPAPPRPRNGYQPHRPPGGGGGKRRNSCNVGGGSGGSFKHP
AFKRRRRVNSDCDSVLPSNFLLGGNIFDPLNLNSLLDEEVSRALNAETPKSSPLPAKGRDPVEILIPKDI
TDPLSLNTCTDEAHVVLASPLKIGRKRHRHRGPHHQQQQQASGGNDSNAAVLPTDPLTPSLHGEGATQQQ
QNRGQNRDAPQPYELNTAINCRDEVVSPLPSALQGSSGSLSAPPAASVTSAPSTSSSSRHRKRRRTSSKS
EAGARGGSQGSKEKGRGSGGGRHHHHPLPATGFKKQQLKFQYGNYCKYYGYRNPSCEDVRLRVLKPEWFQ
GRDVLDLGCNVGHLTLSIACKWGPARMVGLDIDPRLIHSARQNIRHYLSEELRLQAQTSEGDPGTEGEEG
TITVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDELVDAQRPEYDVVLCFSL
TKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYCKRKSLTETIYKNYFRIQLKPEQFSSYLTS
PEVGFSSYELVATPNNTSRGFQRPVYLFHKARSPSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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