CCDS Report for Consensus CDS

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Report for CCDS39331.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
39331.1	Public	Mus musculus	5	Srrt	23	108	98

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 39331.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000040873.11	ENSMUSP00000043123.7	Accepted	alive
		NCBI	NM_031405.2	NP_113582.1	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_113582.1	875	Q99MR6-1	875	100%	0	0

Chromosomal Locations for CCDS 39331.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)

Genome Browser links:

Chromosome	Start	Stop
5	137295831	137295906
5	137295987	137296113
5	137296218	137296319
5	137296467	137296623
5	137296775	137296968
5	137297079	137297232
5	137297340	137297513
5	137297799	137297987
5	137298228	137298306
5	137298391	137298452
5	137298726	137298883
5	137299558	137299672
5	137299754	137299852
5	137299967	137300151
5	137300244	137300413
5	137302126	137302314
5	137302527	137302673
5	137302912	137303040
5	137307046	137307167

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2628 nt):
ATGGGTGACAGTGATGATGAATACGACCGAAGACGCAGGGACAAATTTCGAAGAGAGCGCAGCGATTATG ACCGTTCCCGGGAAAGGGATGAAAGACGGCGAGGGGACGATTGGAATGACCGAGAGTGGGACCGTGGCCG GGAGCGCCGCAGTCGGGGTGAATATCGAGACTACGACAGGAACCGAAGGGAGCGCTTCTCTCCCCCTCGA CACGAACTAAGCCCCCCCCAGAAGCGCATGCGGAGAGACTGGGATGAGCACAGCTCTGACCCATACCACA GTGGCTATGACATGCCCTATGCTGGGGGGGGTGGGGGACCAACTTACGGCCCCCCTCAGCCCTGGGGCCA CCCAGACGTCCACATCATGCAGCACCATGTCCTGCCCATCCAGGCCAGGCTGGGCAGCATCGCAGAGATT GACTTGGGGGTGCCACCGCCCATAATGAAGTCCTTCAAAGAGTTCCTCCTGTCTCTGGATGACTCTGTGG ATGAGACAGAGGCAGTTAAACGCTACAATGACTACAAGCTGGACTTCCGAAGGCAGCAGATGCAGGACTT TTTCCTGGCTCACAAAGACGAGGAGTGGTTCCGATCTAAGTACCACCCTGATGAGGTGGGAAAGCGTCGG CAGGAGGCCCGGGGGGCCCTGCAGAACCGGCTGAAGGTGTTCCTGTCCCTCATGGAGAGTGGCTGGTTTG ATAACCTTCTCTTGGACATAGACAAAGCTGATGCCATTGTCAAGATGCTAGATGCAGCTGTCATTAAGAT GGAAGGTGGCACAGAGAACGATCTCCGAATTTTGGAGCAGGAGGAGGAGGAGGAACAGGCAGGCAAGACT GGGGAGGCCAGCAAGAAAGAGGAGGCCCGTGCTGGACCAGCCCTGGGAGAAGGAGAGCGCAAAGCCAATG ATAAGGATGAGAAGAAAGAAGATGGAAAACAGGCTGAGAATGACAGTTCCAACGATGACAAAACTAAAAA ATCTGAGGGTGATGGGGACAAGGAGGAGAAGAAAGAAGAGGCTGAGAAGGAAGCCAAAAAGAGCAAGAAG CGGAACAGGAAGCAGAGTGGCGATGACAGCTTCGATGAGGGCAGTGTGTCCGAGTCTGAGTCCGAGTCTG AGGGTGGCCAGGCCGAGGAGGAGAAGGAGGAGGCCGAAGAAGCACTTAAAGAAAAGGAGAAGCCCAAAGA GGAGGAGAAGGAGAAGCCTAAGGATGCTGCAGGGTTGGAGTGTAAGCCCCGGCCCTTGCATAAGACTTGC TCTCTCTTCATGCGCAACATCGCACCCAACATTTCAAGGGCAGAGATCATTTCTCTTTGTAAACGATACC CAGGCTTTATGCGAGTGGCACTGTCAGAGCCCCAGCCAGAGAGGAGGTTTTTTCGCCGTGGCTGGGTGAC TTTTGACCGCAGTGTTAACATTAAGGAGATCTGTTGGAACCTGCAGAACATTCGGCTCCGGGAGTGTGAA CTGAGTCCCGGTGTGAACAGAGACCTGACCCGTCGTGTCCGCAACATAAATGGCATTACACAGCACAAGC AGATAGTGCGCAATGACATCAAGTTGGCAGCCAAGCTAATCCACACACTGGATGACAGGACCCAGCTCTG GGCCTCTGAGCCTGGGACGCCTCCTGTGCCCACAAGCCTCCCCTCGCAAAACCCCATCCTGAAGAACATC ACTGACTACCTGATTGAGGAAGTGAGTGCGGAGGAGGAGGAGCTTCTGGGGAGCAGTGGGGGACCCCCTC CTGAGGAGCCTCCCAAGGAGGGCAACCCAGCCGAGATCAACGTGGAGAGAGATGAGAAGCTGATCAAGGT CTTGGATAAACTTCTTCTCTATTTGCGTATTGTGCATTCTCTGGATTATTATAACACCTGTGAGTACCCT AATGAAGACGAGATGCCCAACCGCTGTGGCATAATCCACGTTCGGGGGCCCATGCCTCCCAACCGAATTA GTCACGGAGAAGTGCTGGAGTGGCAGAAGACATTTGAGGAGAAACTGACTCCACTGTTGAGTGTGCGTGA ATCCCTTTCTGAGGAAGAGGCCCAGAAGATGGGTCGAAAAGACCCAGAGCAGGAAGTGGAGAAGTTTGTC ACCTCCAACACGCAGGAACTGGGCAAGGATAAGTGGCTATGTCCTCTCAGTGGCAAGAAATTCAAGGGCC CGGAGTTTGTGCGCAAGCATATCTTCAATAAGCATGCCGAGAAGATCGAGGAGGTGAAGAAGGAGGTGGC GTTCTTCAATAACTTTCTCACAGACGCCAAGCGCCCAGCTTTGCCTGAGATCAAGCCAGCTCAGCCACCT GGCCCTGCCCAGATACTCCCCCCAGGCCTGACCCCAGGACTTCCCTACCCACATCAGACGCCACAGGGCT TGATGCCATATGGTCAGCCCCGGCCTCCCATCTTGGGCTATGGAGCTGGTGCTGTCCGCCCTGCAGTCCC AACAGGAGGGCCTCCATACCCCCATGCTCCATATGGTGCCGGCCGTGGGAACTATGATGCTTTTCGAGGC CAAGGCGGTTATCCTGGGAAACCTCGGAACAGGATGGTTCGAGGAGACCCAAGGGCCATAGTGGAGTATC GGGACCTGGATGCCCCGGATGATGTTGACTTCTTTTGA
Translation (875 aa):
MGDSDDEYDRRRRDKFRRERSDYDRSRERDERRRGDDWNDREWDRGRERRSRGEYRDYDRNRRERFSPPR HELSPPQKRMRRDWDEHSSDPYHSGYDMPYAGGGGGPTYGPPQPWGHPDVHIMQHHVLPIQARLGSIAEI DLGVPPPIMKSFKEFLLSLDDSVDETEAVKRYNDYKLDFRRQQMQDFFLAHKDEEWFRSKYHPDEVGKRR QEARGALQNRLKVFLSLMESGWFDNLLLDIDKADAIVKMLDAAVIKMEGGTENDLRILEQEEEEEQAGKT GEASKKEEARAGPALGEGERKANDKDEKKEDGKQAENDSSNDDKTKKSEGDGDKEEKKEEAEKEAKKSKK RNRKQSGDDSFDEGSVSESESESEGGQAEEEKEEAEEALKEKEKPKEEEKEKPKDAAGLECKPRPLHKTC SLFMRNIAPNISRAEIISLCKRYPGFMRVALSEPQPERRFFRRGWVTFDRSVNIKEICWNLQNIRLRECE LSPGVNRDLTRRVRNINGITQHKQIVRNDIKLAAKLIHTLDDRTQLWASEPGTPPVPTSLPSQNPILKNI TDYLIEEVSAEEEELLGSSGGPPPEEPPKEGNPAEINVERDEKLIKVLDKLLLYLRIVHSLDYYNTCEYP NEDEMPNRCGIIHVRGPMPPNRISHGEVLEWQKTFEEKLTPLLSVRESLSEEEAQKMGRKDPEQEVEKFV TSNTQELGKDKWLCPLSGKKFKGPEFVRKHIFNKHAEKIEEVKKEVAFFNNFLTDAKRPALPEIKPAQPP GPAQILPPGLTPGLPYPHQTPQGLMPYGQPRPPILGYGAGAVRPAVPTGGPPYPHAPYGAGRGNYDAFRG QGGYPGKPRNRMVRGDPRAIVEYRDLDAPDDVDFF

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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