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Report for CCDS39292.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39292.1 Public Mus musculus 5 Zbed5 23 108 98 CCDS HistoryNCBI Gene:71970Re-query CCDS DB by CCDS ID:39292.1Re-query CCDS DB by GeneID:71970See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39292.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041466.13 ENSMUSP00000044533.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041466.13Link to Ensembl Protein Viewer:ENSMUSP00000044533.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000041466Re-query CCDS DB by Protein ID:ENSMUSP00000044533
Original member Current member NCBI NM_183088.2 NP_898911.2 Accepted alive Link to Nucleotide Sequence:NM_183088.2Link to Protein Sequence:NP_898911.2Re-query CCDS DB by Nucleotide ID:NM_183088Re-query CCDS DB by Protein ID:NP_898911Link to BLAST:NP_898911.2

Chromosomal Locations for CCDS 39292.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 129895803 129895852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129899183 129899432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129900345 129900495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129901663 129903482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2271 nt):
ATGCCACGTGGAAGCCGAATCCGCACTTCCCGCGTGACCCTTCTGGCCGGCCGGGCCCCTCAGATGAGGG
CTGCTCCCCGAAGAGCACCTGCAGCTCAGCCTCCAGCAGCAGCTGCGCCATCTGCAGTTGGCTCACCTGC
CGCTGCGCCCCGGCAGCCAGGCCTGATGGCCCAGATGGCTACCACCGCGGCCGGTGTGGCTGTGGGCTCT
GCAGTGGGACACACCCTGGGTCACGCCATCACTGGGGGCTTCAGCGGAGGTGGCAGTGCTGAGCCCGCAA
AGCCCGACATCACTTACCAGGAGCCTCAGGGAGCCCAGCTGCAGAACCAGCAGTCTTTTGGACCTTGCTC
TCTAGAGATCAAGCAGTTTCTGGAGTGTGCTCAGAACCAGAGCGATGTCAAGCTCTGTGAGGGCTTCAAC
GAGGTGCTGCGGCAGTGCAGGATTGCAAATGTGGACCATCCCAGGCCAGTGGATCATGGAGAGAGGAACG
TTAAGAGAAGAAAATATAATGAGGGTTTTTTGCAGTATGGTTTTACCTCAACCATCACAGTAGGAATTGA
GAGACCACAGTGTGTCATTTGTGGGGTGGTTCTGTCGGCGGAGTCGATGAAACCCAACAAACTGAAACGC
CATTTTGAGAGCAAGCATTCCAGCTTCGCCGGCAAGGATACCAACTATTTCAGAAGCAAAGCTGATGGAC
TCAAGAAAGCCAGACCTGATACTGGCAGCAAGTCCAACAAACAGAACGTGGCAGCCGTGGAAACTTCCTA
TTTGGTGGCCCTCAGAATTGCCAGAGATATGAAACCGCACACCTTTGCAGAGCACTTACTGTTCCCGGTG
GCCAAGGACAGGGTTCGCGTCATGATCGGAGACGAATTTGTTACAAAACTGAGTGCAGTCTCCTTATCTA
ACGACACTGTCCGAAGAAGAATACATGACATGTCTGCTGATATTCTTGATCAGGTGGTCCAGGAAATTAA
ATCTGCTCCACTTCCAATATGCAGCATCCAGCTCGATGAATCGACAGACGTTGCAAACTGTTTACAGTTA
ATGGTTTACGTGAGGTATATTAATGATGGTGACTTTAAAGATGAGTTTCTTTGCTGCAAACCTCTTGAAA
GGACAGCTACTGCCCTTGATGTATTTGAGGCAGTCGACTCGTTTCTGAGACAGCATGAGATCTCTTGGAA
AAGCATCTGTGGAGTTTGCACAGACGGTGCCCCAGCTACGCTGGGCTGTCAATCTGGGTTTCAGCGCCTG
GTCCTAAATGAGTCCCCAAAAGCCATTGGAGCTCATTGTATGCTTCATCTGCAAACATTAGCAATGAAGA
CGCTGCCCCAAGACTTCCAGGAAGTAATGAAAAGTGTCCTGAGTTCTGTCAATTTCGTAAAGGCGAGTTC
TTTGAACAGTCGACTGTTTCTGCAGCTCTGCAGTGATTTAGATGAGCCAAGCAAAACCCTGCTACTTCAT
ACTGAAGGGAGATGGCTGTCAAGAGGGAAAGTTCTAAAACGTATCTTTGAGCTCCGTGACGAACTCAAAA
TGTTTTTTAACCAAAAAGCAATACGGCAGTTCGAAGCACTTTTCAGTGATAACAGTGCATTGCAGAAGGT
AGCTTATTTGGTCGATATCTTTACCATTTTGAATGAGTTGAATTTATCACTGCAAGGACCAAATTCAACC
TGCCTGGATCTGTCTGAAAAGATCCACTCATTCCAAATGAAACTTCAACTCTGGCAAAAAAAATTGGATG
AAAATAAATTTTACATGTTGCCTACCTTATCCGCCTTCTTTGAGGAACATGACATTGAACAGCACAAAAG
GATTACAGTGGTGATTTCCGTGAAAGAACACTTGGACATGCTTGCAAGTGAAATTTCCTGGTACTTTCCA
AATCTACCCGAGATTCCGTTTGCACTCGCCAGGAGCCCGTTCTCAGTCAAAGCTGAAGATGTTCCCGAGA
CTGCGCAAGAAGATTTCACCAGACTTACCAACAGCGACGCGGCGAGAGCTGATTTCTCCACAATGCCAGT
CACACAGTTCTGGGTCAAGTGTTTGCAGTCATACCCAGTTCTGTCAGAGATGGTGTTGCGCCTCCTCCTT
CCTTTTCCAACAACATATCTGTGTGAAACAGGGTTCTCAAGTTTGTTAGTTATCAAGTCTAAATACAGAA
GTAGACTTGTGGTGGAAGATGATCTTCGCTGTGCTCTTGCAAAGACCACCCCGAGAATTTCTGATCTGGT
GAGAAAGAAGCAGTCTCAACCTTCGCACTGA

Translation (756 aa):
MPRGSRIRTSRVTLLAGRAPQMRAAPRRAPAAQPPAAAAPSAVGSPAAAPRQPGLMAQMATTAAGVAVGS
AVGHTLGHAITGGFSGGGSAEPAKPDITYQEPQGAQLQNQQSFGPCSLEIKQFLECAQNQSDVKLCEGFN
EVLRQCRIANVDHPRPVDHGERNVKRRKYNEGFLQYGFTSTITVGIERPQCVICGVVLSAESMKPNKLKR
HFESKHSSFAGKDTNYFRSKADGLKKARPDTGSKSNKQNVAAVETSYLVALRIARDMKPHTFAEHLLFPV
AKDRVRVMIGDEFVTKLSAVSLSNDTVRRRIHDMSADILDQVVQEIKSAPLPICSIQLDESTDVANCLQL
MVYVRYINDGDFKDEFLCCKPLERTATALDVFEAVDSFLRQHEISWKSICGVCTDGAPATLGCQSGFQRL
VLNESPKAIGAHCMLHLQTLAMKTLPQDFQEVMKSVLSSVNFVKASSLNSRLFLQLCSDLDEPSKTLLLH
TEGRWLSRGKVLKRIFELRDELKMFFNQKAIRQFEALFSDNSALQKVAYLVDIFTILNELNLSLQGPNST
CLDLSEKIHSFQMKLQLWQKKLDENKFYMLPTLSAFFEEHDIEQHKRITVVISVKEHLDMLASEISWYFP
NLPEIPFALARSPFSVKAEDVPETAQEDFTRLTNSDAARADFSTMPVTQFWVKCLQSYPVLSEMVLRLLL
PFPTTYLCETGFSSLLVIKSKYRSRLVVEDDLRCALAKTTPRISDLVRKKQSQPSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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