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Report for CCDS39287.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39287.1 Public Mus musculus 5 Tmem132d 23 108 98 CCDS HistoryNCBI Gene:243274Re-query CCDS DB by CCDS ID:39287.1Re-query CCDS DB by GeneID:243274See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 39287.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044441.7 ENSMUSP00000043633.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044441.7Link to Ensembl Protein Viewer:ENSMUSP00000043633.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000044441Re-query CCDS DB by Protein ID:ENSMUSP00000043633
Original member Current member NCBI NM_172885.2 NP_766473.1 Accepted alive Link to Nucleotide Sequence:NM_172885.2Link to Protein Sequence:NP_766473.1Re-query CCDS DB by Nucleotide ID:NM_172885Re-query CCDS DB by Protein ID:NP_766473Link to BLAST:NP_766473.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766473.1 1097 Q76HP3 1097 100% 0 0

Chromosomal Locations for CCDS 39287.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 127783762 127784943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 127789723 127789914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 127792349 127792622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 127795898 127796103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 127864595 127864738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 127984241 127984424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 128136883 128137029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 128268492 128269377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 128432286 128432364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3294 nt):
ATGTGCCCATCTGAGATGGGGACTCTGTGGTACCTCTGGTCTCCCGTGCTCATCAGCCTAGCTGCCCTTT
TCTCCAAAGTGACGGAAGGCCGAGGGATCCTGGAGAGCATTCAGCGGTTCTCACTACTGCCTACCTACCT
CCCGGTCACCTACCATATCAACAATGCGGATGTCTCCTTCTTCCTGAAGGAGGCCAACCAGGACATCATG
CGCAACTCCAGCCTGCAGTCGCGGGTCGAGTCCTTCCTGATCTACAAATCTAGGCGACTGCCGGTGCTCA
ACGCCAGCTACGGGCCCTTCTCACTCGAGCAGGTAGTGCCCCAGGATTTGATGTTGCCTTCCAACCCATT
TGGATTCACTAACACATTCTCCCTCAACTGGAGGCTGAAGGCCTACATCCTGCAGGAGAAAGTCTACCTG
AGCCATCCCAAAGTGCAGGTGCTCTTCCACATCGTGGGTCGAGACTGGGATGACCACAGGGACGAGAACT
TGCCTTGCCTGCGGGTCTTTGCGTTCAGAGAGACTCGAGAGGTTCGAGGCAGCTGCCGTTTGGGTGGAGC
CCTGGGACTGTGCGTGGCCCAGCTGGAGATGCTGCCGGGCTGGTTCAGTCCACCATCAGTGGTATCTGGG
CGCAGGAGGCCCACGGAGCAGCCAGAGGGGAATCCCGTGGAACTGTATTATGCTGTACAGCCAGGGGATG
AGCGAGGCGACTGTGCCAAGGAGGATTCGAGGAAGAGCGGTGGTACTCCAGCAGGCCACAATGATGTTGA
TGAATCCAGTCCCCCTTTGCATAGAATTGGGAGCGTCTTCCTTCGGGAGACCCCCAGCAGTCCACCTTTG
AAGGAACTGCGTTTGGATAGCAATGTGGCTGTTCATTATGTCCCTAAGACTGTGCGGCAAGGAGATGTAC
TCACCTTCCCTATCTCTGTCTCCAGGAACTGCACGGAGGATCGCTTCACACTGAGGGCCAAGGTTAAGAA
AGGAGTGAGCATTGTTGGGGTGAGAGCCAGCAGCTCTTCAATCTGGGATGTCAGACAGAGCACTGAGTAC
ACTGGGAAATATGCTCCGGCCGTCATCGTTTGTCAGAAGAAATCTGCTGGCTCCGAAAAGAGTGTGGCTG
ATGCCTCCTATGAAGTCATGAAGATTGATATCGAGGTCGAAGCACCCAGTGACCCACCCACCACACAGCT
GGTCACGTGGCAGGTTGAATACCCAGGAGAGATCACCTCTGACCTGGGAGTGTCCAAGATCTATGTGAGC
CAAAAGGACTTGATTGAAGTCATACCACTAGCCATGGAGGCAGAGATCCTGAACACAGCCATCCTCACTG
GAAAGACGGTGGCTGTCCCTGTGAAGGTGATCTCTGTGGAGGAAGATGGCACAGTACAAGGTCTTTTGGA
CTCAGTGGAGTGCAGGTCATCTGACGAAGACGTGGTTAAGGTTTCTGACAGATGTGACTATGTCTTTGTC
AATGGGAAAGAAATGAAGGGCAAGGTGAACGTGGTAGTCAGCTTCACCTACCAGCACCTGAGCAGCCCCC
TGGAGATGACAGTGTGGGTACCACGGCTACCTCTGCAGATTGAGGTCTCAGACATGGAGTTGAACCAGAT
CAAGGGCTGGCGGGTCCCCATTGTCTCCAACAAAAGGCCAGCTCGGGACAGTGAGGAGGAAGATGATGAT
GAGAAGAAGGGCCGAGGCTGCACCCTTCAGTACCAGCATGCCATGGTGCGAGTCTTGACCCAATTTGTGG
CTGAGGCGCCTGATCCCGGGGGACACCTGGCCTACCTGCTGGGCTCTGACTGGCAGGTGGACATCACGGA
GCTGATAACTGACTTCATGCAGGTAGAGGAGCCCAGGATTGCTAAGCTGCAAGGAGGGCAGATCCTGACT
GGCCAGGAGCTGGGCATGACCACTATTCAGATCCTGTCCCCTCTGTCGGATGCCATCCTTGCCGAGAAGA
CCATCACTGTACTGGATGAGAAGGTGACCATCACAGACCTCGGGGTCCAGCTGGTAACAGGGCTCTCGCT
ATCCCTGCAGCTCAGCCCCGGGAGCAACAGAGCCATCTTTGCCACTGCCATGGCTCAGGAACTTCTGCAG
AGGCCCAAACAGGAAGCAGCCATCAGCTGCTGGGTGCAGTTCAGCGACGGCTCTGTCACACCCTTGGACA
TTTATGATGAGAAGGACTTCTCCCTGATGGCTACATCCTTGGATGAGAAGGTTGTCTCCATCCTCCAGGA
CCCCAAATTCAAGTGGCCTATCATTGCTGCAGAAAACGAAGGACAGGGGGCCCTGGTCAAGGTTGAGATG
CTCATCAGTGAATCTTGCCAGAAGTCTAAGCGGAAGAGCGTGCTGGCTGTGGGAACAGCCAGCATCAAGG
TTAAATTTGGACAGAATGATGCAAACCCCAACAGCAGTGAGAGTGGACACCTTGGGGCTGGGCTTCATGT
AGAGAATATCAATGACAGGAGGTCCAAAAAGCCTTTTCAGGAATGGGGGAGCCCCGAGGGGCCATTCTAC
AGCAGCTCATCCATGGGGCTCATGGAGGGATGGGGCAGTACCACCAAGAGGCCAACTTTCCAGAAGAAGG
AAGGCCAGGAAAACCTGTTAGATGACATCATCCTCTCTCAGACCATGGCCACAGACCTCACCAGCTTCCC
AGACCAAATGGACCTCCCCGGGAGCAATGTGGGCACTGAGGAACATGACCTTGATCAGGCAGCCAAGGGG
CTGAGTGACCTCGAAATTGGCATGTATGCTCTGCTGGGTGTCTTCTGCCTGGCTATCTTGGTGTTCTTAA
TTAACTGTGTGACTTTTGCCCTGAAGTACAGGCACAAGCAGGTTCCCTTTGAGGAGCAAGAAGGTCTGAG
TCACTCTCACGACTGGGTTGGGCTGAGCAACCGGACAGAGCTGTTGGGGAACCATATGAACTTCGCCTCC
TCCCAAGAGGAGCAGATCACTGCCATTGACAGGGGTCTGGACTTTGAGGAGAGCAAACTCCTTCTCAGCT
CAAACTCTCAGAACAGCATCAATGGACAGATGTTCAGGTCCACAGGAGCCATGCTCACAGACGACCAAGA
ACAGAAAAGCGAACCCCCTACCTCCCCTACCTCCAAAAGGAAAAGAGTGACATTTTCCACATTCTCGGCC
ATCTCCTCAGACGATGGGTGTCCTTCTGGGAACACCATGGTGTTGAGTAATGAGGATGACATTAAGTGGG
TCTGCCAGGGCCTGGATCCTGGCGAGTGCACAGAACCTCACAGTTGCATGGAGAGGTTACACGAGCACGT
ATAA

Translation (1097 aa):
MCPSEMGTLWYLWSPVLISLAALFSKVTEGRGILESIQRFSLLPTYLPVTYHINNADVSFFLKEANQDIM
RNSSLQSRVESFLIYKSRRLPVLNASYGPFSLEQVVPQDLMLPSNPFGFTNTFSLNWRLKAYILQEKVYL
SHPKVQVLFHIVGRDWDDHRDENLPCLRVFAFRETREVRGSCRLGGALGLCVAQLEMLPGWFSPPSVVSG
RRRPTEQPEGNPVELYYAVQPGDERGDCAKEDSRKSGGTPAGHNDVDESSPPLHRIGSVFLRETPSSPPL
KELRLDSNVAVHYVPKTVRQGDVLTFPISVSRNCTEDRFTLRAKVKKGVSIVGVRASSSSIWDVRQSTEY
TGKYAPAVIVCQKKSAGSEKSVADASYEVMKIDIEVEAPSDPPTTQLVTWQVEYPGEITSDLGVSKIYVS
QKDLIEVIPLAMEAEILNTAILTGKTVAVPVKVISVEEDGTVQGLLDSVECRSSDEDVVKVSDRCDYVFV
NGKEMKGKVNVVVSFTYQHLSSPLEMTVWVPRLPLQIEVSDMELNQIKGWRVPIVSNKRPARDSEEEDDD
EKKGRGCTLQYQHAMVRVLTQFVAEAPDPGGHLAYLLGSDWQVDITELITDFMQVEEPRIAKLQGGQILT
GQELGMTTIQILSPLSDAILAEKTITVLDEKVTITDLGVQLVTGLSLSLQLSPGSNRAIFATAMAQELLQ
RPKQEAAISCWVQFSDGSVTPLDIYDEKDFSLMATSLDEKVVSILQDPKFKWPIIAAENEGQGALVKVEM
LISESCQKSKRKSVLAVGTASIKVKFGQNDANPNSSESGHLGAGLHVENINDRRSKKPFQEWGSPEGPFY
SSSSMGLMEGWGSTTKRPTFQKKEGQENLLDDIILSQTMATDLTSFPDQMDLPGSNVGTEEHDLDQAAKG
LSDLEIGMYALLGVFCLAILVFLINCVTFALKYRHKQVPFEEQEGLSHSHDWVGLSNRTELLGNHMNFAS
SQEEQITAIDRGLDFEESKLLLSSNSQNSINGQMFRSTGAMLTDDQEQKSEPPTSPTSKRKRVTFSTFSA
ISSDDGCPSGNTMVLSNEDDIKWVCQGLDPGECTEPHSCMERLHEHV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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