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Report for CCDS39257.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39257.1 Public Mus musculus 5 Fam216a 23 108 98 CCDS HistoryNCBI Gene:68948Re-query CCDS DB by CCDS ID:39257.1Re-query CCDS DB by GeneID:68948See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39257.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031419.5 ENSMUSP00000031419.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031419.5Link to Ensembl Protein Viewer:ENSMUSP00000031419.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000031419Re-query CCDS DB by Protein ID:ENSMUSP00000031419
Original member Current member NCBI NM_026883.4 NP_081159.1 Accepted alive Link to Nucleotide Sequence:NM_026883.4Link to Protein Sequence:NP_081159.1Re-query CCDS DB by Nucleotide ID:NM_026883Re-query CCDS DB by Protein ID:NP_081159Link to BLAST:NP_081159.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081159.1 251 Q9DB54 251 100% 0 0

Chromosomal Locations for CCDS 39257.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 122364795 122364919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122366314 122366396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122367348 122367519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122367599 122367728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122369517 122369638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122370515 122370573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122371883 122371947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (756 nt):
ATGCCGAGCCGTTGGCCCGGGGTCGCGGGGCCGCCCGCCTTGGCCCGGACGGAAGGCGGTGAAGGATCAG
CTGGACATTCTTATCCCCAGAATTCCAAGGGCACTGGCGAGCAGCATAAAGCAGACAGAATCAAGGAGGG
ACACAGAGTGTACGCACACATTGCCAAACTGCAGGAGTTATGGAAAACTACTCAAATCCAAACAATTCAT
ATCCCTAAATCAATGACAGATGCATCTTTTCTAAAGCATCCAGAGCTCACCTTGGGCCAGAAGCGTTACC
TGTGCAGCGTTGCTAAGATCTGTAACTCCAGCTACCTGAGGACCTTGATGAAGAGGCAGTACATGCACAT
ATTTCATCACGGGTCACAGAAGACAGGTGTGCTCACTCACCACAGAGGCCATATGAGCTCTCGCTACTCA
CAGAAACAGCATTCCCCCTGTACTGCATGGAGACACCATCTGGAGAGAGAGGACTCTCTGAGCATTGCAG
CTGGAGCACCTGAAATGATCATACATTCCCTTTGGCGACCCCTGAGACACAAAGAAGGGTTAAAAATTGG
GTATGCATCTAAAACAAGATGCAAGTCCCTGAAGATTTTTAGAAGACCAGGCAGACTGTTCTTGTTACCA
GTTCCTTCTAATGATTCTCAGTCATGCCCGAGTGAAGAAACACAGGAGGAGGATCTGCTGAATAAGTGCA
TGCAGTCCATGTCCATCCAAGAACAAGGCCCAGCTCACGCCAGCCTGACGGTCTAG

Translation (251 aa):
MPSRWPGVAGPPALARTEGGEGSAGHSYPQNSKGTGEQHKADRIKEGHRVYAHIAKLQELWKTTQIQTIH
IPKSMTDASFLKHPELTLGQKRYLCSVAKICNSSYLRTLMKRQYMHIFHHGSQKTGVLTHHRGHMSSRYS
QKQHSPCTAWRHHLEREDSLSIAAGAPEMIIHSLWRPLRHKEGLKIGYASKTRCKSLKIFRRPGRLFLLP
VPSNDSQSCPSEETQEEDLLNKCMQSMSIQEQGPAHASLTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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