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Report for CCDS39111.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39111.1 Public Mus musculus 5 Nipal1 23 108 98 CCDS HistoryNCBI Gene:70701Re-query CCDS DB by CCDS ID:39111.1Re-query CCDS DB by GeneID:70701See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 39111.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087212.7 ENSMUSP00000084462.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087212.7Link to Ensembl Protein Viewer:ENSMUSP00000084462.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000087212Re-query CCDS DB by Protein ID:ENSMUSP00000084462
Original member Current member NCBI NM_001081205.1 NP_001074674.1 Accepted alive Link to Nucleotide Sequence:NM_001081205.1Link to Protein Sequence:NP_001074674.1Re-query CCDS DB by Nucleotide ID:NM_001081205Re-query CCDS DB by Protein ID:NP_001074674Link to BLAST:NP_001074674.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074674.1 416 Q8BMW7 416 100% 0 0

Chromosomal Locations for CCDS 39111.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 72647888 72647933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72658682 72658948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72660756 72660812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72663534 72663624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72666776 72666936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72667588 72668216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1251 nt):
ATGGGGGTACAGCTGAGGCTGCCACCCGGAGAGCCCTGCCATGAAGGGTATGTACTGTCGCTGGTCTGCT
CCAACTCTTCCCGGGCTTCGTGCGAGATCACAAATGTGTCAGAGTCGCTGCCTTATCCTGTCGTCTACAC
GAACCTGAATTCCTCTAAAACCAACTTCAGCATTTCAGCAAGTGTAGAAAACAAATACAATCTGTATGTG
GGCTTGGTATTGGCCATAAGCTCCAGCGTTTTCATTGGCTCTAGTTTCATACTCAAAAAGAAGGGTCTCT
TGCAACTGGCCGACAAGGGCATCACCAGAGCAGGGCAAGGTGGACATTCTTACCTCAAGGAATGGTTGTG
GTGGGCAGGACTGCTGTCAATGGGAGCCGGAGAGGCTGCGAACTTCGCCGCTTATGCCTTTGCGCCTGCC
ACCTTGGTCACCCCACTGGGGGCTCTGAGCGTTCTCATAAGTGCAATATTGTCTTCCTATTTTTTAAATG
AGCGCTTGAATATTCACGGGAAAATAGGCTGCATTTTAAGCGTATTGGGGTCAACTGTGATGGTTATCCA
CGCCCCACAAGAGGGAGAAGTCACATCTTTGCATGAAATGGAAATGAAATTGAGAGATCCAGGGTTCGTT
TCCTTTGCTGTGATCATCTCTGTGATCTCACTGGTGCTGATTTTGATTGTGGCCCCCAAGAAAGGACAGA
CTAATATATTAGTCTATATCGCAATCTGCTCTTTGATTGGAGCGTTTTCCGTCTCTTCTGTCAAAGGCTT
GGGAATTGCCATTAAGGAACTGCTGGAACGGAAGCCTGTTTACAAGGATCCCCTGTTCTTCATCCTGTTG
ACCATGCTTGCACTTTCCGTGACCACCCAGATTAACTATCTCAACAAGGCCCTGGACACTTTCAACACAT
CCCTGGTGACTCCCATTTATTACGTGTTCTTCACATCCATGGTGGTAACTTGTTCTGCCATCCTGTTCCA
GGAGTGGTATGGCATGAAAGCTGGAGATATCATCGGTACCCTGAGCGGGTTCTTCACCATCATCAATGGC
ATCTTCCTCCTACATGCTTTTAAAAACACCAACATCACCTGGAGTGAACTCATGTCTACTGCTAAGAAAG
AAGCCCTTTCTCCAAATGGCAATCAGAACAGTTATGTTTTACTAGAGAACGCAGACTTCTCAGCCTCTGG
GTATGATGACGACATCACCCTGTTTAGCAGGACCAATGACCAAAGTAGCCATAAACTTTGA

Translation (416 aa):
MGVQLRLPPGEPCHEGYVLSLVCSNSSRASCEITNVSESLPYPVVYTNLNSSKTNFSISASVENKYNLYV
GLVLAISSSVFIGSSFILKKKGLLQLADKGITRAGQGGHSYLKEWLWWAGLLSMGAGEAANFAAYAFAPA
TLVTPLGALSVLISAILSSYFLNERLNIHGKIGCILSVLGSTVMVIHAPQEGEVTSLHEMEMKLRDPGFV
SFAVIISVISLVLILIVAPKKGQTNILVYIAICSLIGAFSVSSVKGLGIAIKELLERKPVYKDPLFFILL
TMLALSVTTQINYLNKALDTFNTSLVTPIYYVFFTSMVVTCSAILFQEWYGMKAGDIIGTLSGFFTIING
IFLLHAFKNTNITWSELMSTAKKEALSPNGNQNSYVLLENADFSASGYDDDITLFSRTNDQSSHKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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