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Report for CCDS39107.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39107.1 Public Mus musculus 5 Gabra4 23 108 98 CCDS HistoryNCBI Gene:14397Re-query CCDS DB by CCDS ID:39107.1Re-query CCDS DB by GeneID:14397See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39107.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031121.9 ENSMUSP00000031121.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031121.9Link to Ensembl Protein Viewer:ENSMUSP00000031121.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000031121Re-query CCDS DB by Protein ID:ENSMUSP00000031121
Original member Current member NCBI NM_010251.2 NP_034381.1 Accepted alive Link to Nucleotide Sequence:NM_010251.2Link to Protein Sequence:NP_034381.1Re-query CCDS DB by Nucleotide ID:NM_010251Re-query CCDS DB by Protein ID:NP_034381Link to BLAST:NP_034381.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034381.1 552 Q9D6F4 552 100% 0 0

Chromosomal Locations for CCDS 39107.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 71571699 71572223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 71623855 71624114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 71633546 71633698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 71638132 71638275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 71640828 71640910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 71641063 71641283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 71642259 71642326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 71657171 71657289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 71657724 71657809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1659 nt):
ATGGTTTCTGTCCAGAAGGTACCCGCGATTGCGCTGTGCTCCGGGGTCAGCCTCGCCCTCCTGCACTTCC
TGTGCCTGGCGGCTTGTTTAAACGAATCCCCAGGACAGAACTCAAAGGACGAGAAATTGTGCCCGGAAAA
TTTTACCCGTATTCTGGACAGTTTGCTGGATGGTTATGACAACAGGCTGCGTCCTGGATTTGGGGGTCCT
GTTACAGAAGTGAAAACTGATATATATGTCACCAGCTTTGGGCCCGTTTCTGATGTTGAAATGGAATACA
CTATGGATGTGTTCTTCAGACAGACATGGATTGACAAAAGACTAAAATATGACGGCCCAATTGAAATCTT
GAGGCTGAATAATATGATGGTCACCAAAGTTTGGACCCCTGATACTTTCTTCAGGAATGGAAAGAAATCT
GTCTCACATAACATGACAGCTCCAAATAAGCTTTTTAGAATTATGAGAAATGGCACTATTTTATACACAA
TGAGACTCACCATAAGTGCGGAGTGCCCCATGAGACTGGTGGATTTTCCTATGGATGGTCATGCCTGCCC
TTTGAAATTTGGGAGTTATGCATATCCCAAAAGTGAGATGATCTACACCTGGACCAAAGGCCCTGAGAAG
TCAGTGGAGGTGCCAAAGGAGTCTTCTAGCTTAGTTCAATATGACCTCATTGGGCAGACTGTATCAAGCG
AGACTATCAAATCTATTACAGGTGAATACATTGTTATGACGGTTTACTTCCACCTCAGACGGAAGATGGG
CTACTTTATGATTCAGACGTATATCCCATGCATCATGACAGTGATTCTTTCTCAAGTTTCCTTCTGGATA
AACAAGGAGTCTGTTCCAGCTAGAACTGTATTTGGAATAACCACAGTCCTCACGATGACCACCCTAAGCA
TCAGTGCTCGGCATTCTTTGCCCAAAGTGTCCTATGCGACTGCCATGGATTGGTTCATAGCTGTCTGTTT
TGCTTTTGTATTTTCGGCTCTTATTGAGTTTGCTGCTGTCAACTATTTCACCAACATTCAAATGCAGAAA
GCCAAAAAGAAGATATCAAAGCCTCCCCCAGAAGTTCCAGCTGCTCCTGTGCTGAAGGAGAAACACACAG
AAACATCCCTTCAGAATACACATGCCAATTTGAACATGAGGAAAAGAACAAATGCCTTGGTCCATTCAGA
ATCGGATGTCAAAAGCAGAACTGAGGTGGGAAATCACTCCAGCAAGACCAGCGCTGTCCAGGAGTCTTCT
GAAGCCACGCCTAAGGCTCACTTAGCTTCCAGTCCAAATCCATTCAGCAGGGCAAATGCAGCTGAGACTA
TGTCTGCTGCAGCCAGAGGTCTTTCATCTGCAGCATCCCCCTCTCCTCATGGCACATTGCGGCCAGCTTC
TTTGGGGTCAGCTTCCACTCGCCCTGCATTTGGATCTAGACTTGGGCGAATTAAGACAACAGTTAATACA
ACAGGGGCTGCTGGGAATGTGTCAGCCACACCTCCTCCCCCTGCTCCACCGCCTTCTGGATCTGGCACAA
GTAAAATAGACAAATATGCTCGTATTCTCTTTCCAGTCACATTTGGAGCATTTAACATGGTCTACTGGGT
TGTTTATTTATCTAAGGACACCATGGAGAAATCAGAAAGTCTAATGTAA

Translation (552 aa):
MVSVQKVPAIALCSGVSLALLHFLCLAACLNESPGQNSKDEKLCPENFTRILDSLLDGYDNRLRPGFGGP
VTEVKTDIYVTSFGPVSDVEMEYTMDVFFRQTWIDKRLKYDGPIEILRLNNMMVTKVWTPDTFFRNGKKS
VSHNMTAPNKLFRIMRNGTILYTMRLTISAECPMRLVDFPMDGHACPLKFGSYAYPKSEMIYTWTKGPEK
SVEVPKESSSLVQYDLIGQTVSSETIKSITGEYIVMTVYFHLRRKMGYFMIQTYIPCIMTVILSQVSFWI
NKESVPARTVFGITTVLTMTTLSISARHSLPKVSYATAMDWFIAVCFAFVFSALIEFAAVNYFTNIQMQK
AKKKISKPPPEVPAAPVLKEKHTETSLQNTHANLNMRKRTNALVHSESDVKSRTEVGNHSSKTSAVQESS
EATPKAHLASSPNPFSRANAAETMSAAARGLSSAASPSPHGTLRPASLGSASTRPAFGSRLGRIKTTVNT
TGAAGNVSATPPPPAPPPSGSGTSKIDKYARILFPVTFGAFNMVYWVVYLSKDTMEKSESLM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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