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Report for CCDS39101.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39101.1 Public Mus musculus 5 Chrna9 23 108 98 CCDS HistoryNCBI Gene:231252Re-query CCDS DB by CCDS ID:39101.1Re-query CCDS DB by GeneID:231252See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39101.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031108.8 ENSMUSP00000031108.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031108.8Link to Ensembl Protein Viewer:ENSMUSP00000031108.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000031108Re-query CCDS DB by Protein ID:ENSMUSP00000031108
Original member NCBI NM_001081104.1 NP_001074573.1 Updated not alive Link to Nucleotide Sequence:NM_001081104.1Link to Protein Sequence:NP_001074573.1Re-query CCDS DB by Nucleotide ID:NM_001081104Re-query CCDS DB by Protein ID:NP_001074573
Current member NCBI NM_001081104.2 NP_001074573.1 Accepted alive Link to Nucleotide Sequence:NM_001081104.2Link to Protein Sequence:NP_001074573.1Re-query CCDS DB by Nucleotide ID:NM_001081104Re-query CCDS DB by Protein ID:NP_001074573Link to BLAST:NP_001074573.1

Chromosomal Locations for CCDS 39101.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 65967448 65967511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65967782 65967927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65969115 65969269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65970816 65971348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65976706 65977247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1440 nt):
ATGAACCGGCCCCATCCCTGCATCTCCTTTTGCTGGATGTATTTTGCTGCTTCTGGAATCAAAGCCGTAG
AGACAGCAAATGGAAAGTATGCCCAGAAATTGTTTAGCGATCTTTTTGAAGACTACTCCAATGCTCTGCG
TCCAGTAGAAGATACGGACGCGGTGCTGAACGTCACTCTGCAGGTCACGCTCTCCCAGATAAAGGACATG
GACGAGAGAAATCAGATTCTGACAGCCTACCTGTGGATCCGCCAAACTTGGCACGATGCGTACCTCACGT
GGGATCGAGACCAGTATGACGGGCTGGACTCCATCAGGATTCCCAGCGATCTGGTGTGGAGGCCGGACAT
TGTCCTCTACAACAAGGCCGATGACGAGTCTTCAGAGCCGGTGAACACCAACGTGGTCCTGCGGTACGAT
GGGCTCATCACCTGGGACTCACCAGCCATCACCAAAAGCTCCTGTGTGGTGGATGTCACCTATTTCCCCT
TCGACAGCCAGCAGTGCAACCTGACCTTTGGTTCCTGGACCTACAATGGGAACCAGGTGGACATATTCAA
TGCCCTGGACAGTGGTGACCTCTCTGACTTCATTGAAGACGTGGAATGGGAGGTTCAGGGCATGCCTGCC
GTGAAGAACGTCATCTCCTACGGCTGCTGCTCGGAGCCTTACCCAGACGTCACCTTCACTCTCCTTCTGA
AGAGGAGGTCTTCCTTTTACATTGTCAACCTCCTCATCCCTTGCGTCCTCATATCGTTCCTCGCTCCGCT
GAGTTTCTACCTCCCAGCAGCCTCCGGGGAGAAGGTCTCTCTGGGAGTGACCATCCTATTGGCCATGACT
GTATTTCAGCTAATGGTGGCAGAGATCATGCCAGCCTCAGAAAACGTCCCTCTGATAGGAAAATACTACA
TAGCTACCATGGCCTTGATCACCGCCTCCACAGCCCTTACCATCATGGTGATGAATATCCACTTCTGTGG
GGCGGAAGCCCGGCCAGTACCACACTGGGCCAAGGTGGTCATCCTGAAATACATGTCCAGGATCTTGTTT
GTCTACGATGTGGGTGAGAGCTGCCTTAGCCCCCGTCACAGCCAGGAGCCAGAACAAATCACGAAGGTTT
ATGGCAAACTTCCAGGGTCCAACCTGAAAGCATCCAGAAACAAAGACCTTTCCAGAAAGAAGGAACTGAG
AAAACTCCTAAAGAATGACCTAGGGTACCAGGGTGGGATCCCCCAGAATACTGACAGCTACTGTGCACGC
TATGAAGCACTGACAAAAAATATTGAATACATTGCCAAATGTCTCAAGGACCACAAGGCCACCAACTCCA
AGGGCAGCGAGTGGAAGAAGGTCGCCAAGGTCATAGACCGTTTCTTCATGTGGATTTTCTTCGCTATGGT
GTTTGTCATGACCGTCTTGATCATAGCAAGAGCAGATTAG

Translation (479 aa):
MNRPHPCISFCWMYFAASGIKAVETANGKYAQKLFSDLFEDYSNALRPVEDTDAVLNVTLQVTLSQIKDM
DERNQILTAYLWIRQTWHDAYLTWDRDQYDGLDSIRIPSDLVWRPDIVLYNKADDESSEPVNTNVVLRYD
GLITWDSPAITKSSCVVDVTYFPFDSQQCNLTFGSWTYNGNQVDIFNALDSGDLSDFIEDVEWEVQGMPA
VKNVISYGCCSEPYPDVTFTLLLKRRSSFYIVNLLIPCVLISFLAPLSFYLPAASGEKVSLGVTILLAMT
VFQLMVAEIMPASENVPLIGKYYIATMALITASTALTIMVMNIHFCGAEARPVPHWAKVVILKYMSRILF
VYDVGESCLSPRHSQEPEQITKVYGKLPGSNLKASRNKDLSRKKELRKLLKNDLGYQGGIPQNTDSYCAR
YEALTKNIEYIAKCLKDHKATNSKGSEWKKVAKVIDRFFMWIFFAMVFVMTVLIIARAD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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