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Report for CCDS39009.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39009.1 Public Mus musculus 5 Sri 23 108 98 CCDS HistoryNCBI Gene:109552Re-query CCDS DB by CCDS ID:39009.1Re-query CCDS DB by GeneID:109552See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39009.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000148633.3 ENSMUSP00000118221.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000148633.3Link to Ensembl Protein Viewer:ENSMUSP00000118221.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000148633Re-query CCDS DB by Protein ID:ENSMUSP00000118221
Original member Current member NCBI NM_001080974.2 NP_001074443.1 Accepted alive Link to Nucleotide Sequence:NM_001080974.2Link to Protein Sequence:NP_001074443.1Re-query CCDS DB by Nucleotide ID:NM_001080974Re-query CCDS DB by Protein ID:NP_001074443Link to BLAST:NP_001074443.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074443.1 198 Q6P069-1 198 100% 0 0

Chromosomal Locations for CCDS 39009.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 8056589 8056639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8057538 8057621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8059353 8059422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8062384 8062427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8063260 8063407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8063637 8063750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8064558 8064616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8067533 8067559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (597 nt):
ATGGCGTATCCCGGGCACCCTGGCGCGGGCGGAGGGTACTACCCAGGCGGGTATGGTGGGGCTCCCGGAG
GGCCTGCGTTCCCTGGACAAACTCAGGATCCGCTATATGGTTACTTTGCTGCTGTGGCTGGACAGGACGG
ACAAATTGATGCTGACGAATTGCAGAGATGCCTAACACAGTCTGGCATTGCGGGAGGATACAAGCCTTTT
AACCTGGAGACTTGTCGCCTTATGGTTTCAATGTTGGATAGAGATATGTCCGGCACGATGGGGTTCAATG
AATTCAAAGAGCTCTGGGCTGTGCTGAATGGCTGGAGACAACACTTCATCAGTTTCGATAGCGATAGGAG
TGGCACCGTGGATCCCCAGGAGCTACAGAAGGCCCTGACGACTATGGGATTCAGGTTGAGCCCCCAAACT
GTGAATTCAGTTGCAAAGCGATACAGCACCAGCGGGAAGATCACGTTTGATGACTACATTGCCTGCTGTG
TCAAACTGAGGGCTCTCACAGATAGCTTTCGCAGACGGGATTCGGGTCAACAAGGAGTTGTGAATTTCTC
GTATGATGATTTCATCCAGTGTGTCATGACCGTCTAA

Translation (198 aa):
MAYPGHPGAGGGYYPGGYGGAPGGPAFPGQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPF
NLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQT
VNSVAKRYSTSGKITFDDYIACCVKLRALTDSFRRRDSGQQGVVNFSYDDFIQCVMTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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