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Report for CCDS39004.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39004.2 Under review, update Mus musculus 5 Mterf1b 23 108 98 CCDS HistoryNCBI Gene:208595Re-query CCDS DB by CCDS ID:39004.2Re-query CCDS DB by GeneID:208595See the combined annotation on chromosome 5 in Sequence Viewer

Public Note for CCDS 39004.1
The coding region has been updated to extend the N-terminus. The use of an alternative upstream start codon, which appears to be rodent-specific, would result in a protein that is 2 aa longer at the N-terminal.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 39004.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000177258.1 ENSMUSP00000135408.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177258.1Link to Ensembl Protein Viewer:ENSMUSP00000135408.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177258Re-query CCDS DB by Protein ID:ENSMUSP00000135408
Original member NCBI NM_001042670.1 NP_001036135.2 Updated not alive Link to Nucleotide Sequence:NM_001042670.1Link to Protein Sequence:NP_001036135.2Re-query CCDS DB by Nucleotide ID:NM_001042670Re-query CCDS DB by Protein ID:NP_001036135
Current member NCBI NM_001042670.2 NP_001036135.3 Pending alive Link to Nucleotide Sequence:NM_001042670.2Link to Protein Sequence:NP_001036135.3Re-query CCDS DB by Nucleotide ID:NM_001042670Re-query CCDS DB by Protein ID:NP_001036135Link to BLAST:NP_001036135.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001036135.3 379 B9EJ57 379 100% 0 0

Chromosomal Locations for CCDS 39004.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 4196361 4197506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1146 nt):
ATGATTATGGCATCAAGAAACATCTGGTGTGTGAGAAGAAACTTTCTCTTTGATTTAAGAGGCTGGATGC
TTCAGTATTCAGCAGAAGTTTTCCTCAAGTCGATTTCATTCAGGACGTTTAGTGTGGAATGCGACAGTAA
GGACAAGGAGTCTTTGGAGGAGGAGAGGGAGGACCTGCTGAGCAACTTAGTCACCATGGGCGTTGATATC
GACATGGCAAGGAGGCGACAGCCTGGAGTTTTTAACAAGGCTGTTACGAATGAGCAGGAGCTGAAGATAT
TCCTTCTGTCCAAGGGAGCTAGTGACAAAGTGATTGGTAGCATCATATCAAGATATCCACGAGCTATAAC
ACGCACTCCTGAAAGTCTTTCAAAACGGTGGGATCTGTGGAGAAAGATTATGGCATCAGACCTTGAAATT
GTAAATATTTTGGAGCGTTCTCCTGAATCCTTTTTTCGATCTAATAACAATCTAAACTTAGAGAATAATA
TAAAGTTCCTTTGCTCTGTTGGATTGACTCATAAATGCCTCTGCAGACTGTTGACCAATGCTCCCAGAAC
CTTCTCCAACAGTCTGAATTTGAATAAGCAAATGGTTGAATTTTTGCAGGAGACTGGTATGTCCTTAGGT
CACAATGATCCCAGAGATTTTGTCAGGAAGATAATTTCTAAAAACCCTTCCATCTTAATTCAGAGCACCA
AGCGTGTAAAAACTAACATTGAATTTTTACAATCAACTTTCAACTTGAACAAACAGGACCTGCTGCTTCT
GATATGTGGCCCAGGAGCTAGAATCTTAGACCTTTCCAATGACTGTACCAAAAAAAATTACACAAACATA
AGAGAGAGGCTGCTTTCTCTTGGGTGCAGTGAGGAGGAGGTACAGAGGTTTGTCCTAAGCTATCTGAATA
TGGTCTTCTTGTCAGAAAAAAAGTTTAATGATAAAATAGACTGCCTTATAGAAGAAAAAATCAGTGCTTC
ACAAATAATTGAAAATCCGAGGATTTTAGACTCCAGCATAAATACTTTAAAAACTCGCATCCGAGAGCTG
TCCCATGCTGGGTATGACTTGAGCACATCCAGCATTGCTCTGCTGTCCTGGAGTCAGAGAAGATATGAAG
CTAAACTGAAGAGATTATGTGGATAG

Translation (381 aa):
MIMASRNIWCVRRNFLFDLRGWMLQYSAEVFLKSISFRTFSVECDSKDKESLEEEREDLLSNLVTMGVDI
DMARRRQPGVFNKAVTNEQELKIFLLSKGASDKVIGSIISRYPRAITRTPESLSKRWDLWRKIMASDLEI
VNILERSPESFFRSNNNLNLENNIKFLCSVGLTHKCLCRLLTNAPRTFSNSLNLNKQMVEFLQETGMSLG
HNDPRDFVRKIISKNPSILIQSTKRVKTNIEFLQSTFNLNKQDLLLLICGPGARILDLSNDCTKKNYTNI
RERLLSLGCSEEEVQRFVLSYLNMVFLSEKKFNDKIDCLIEEKISASQIIENPRILDSSINTLKTRIREL
SHAGYDLSTSSIALLSWSQRRYEAKLKRLCG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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