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Report for CCDS38815.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38815.1 Public Mus musculus 4 Gm12695 23 108 98 CCDS HistoryNCBI Gene:620779Re-query CCDS DB by CCDS ID:38815.1Re-query CCDS DB by GeneID:620779See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38815.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107071.1 ENSMUSP00000102686.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107071.1Link to Ensembl Protein Viewer:ENSMUSP00000102686.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107071Re-query CCDS DB by Protein ID:ENSMUSP00000102686
Original member NCBI NM_001081284.1 NP_001074753.1 Updated not alive Link to Nucleotide Sequence:NM_001081284.1Link to Protein Sequence:NP_001074753.1Re-query CCDS DB by Nucleotide ID:NM_001081284Re-query CCDS DB by Protein ID:NP_001074753
Current member NCBI NM_001081284.2 NP_001074753.1 Accepted alive Link to Nucleotide Sequence:NM_001081284.2Link to Protein Sequence:NP_001074753.1Re-query CCDS DB by Nucleotide ID:NM_001081284Re-query CCDS DB by Protein ID:NP_001074753Link to BLAST:NP_001074753.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074753.1 545 A2AGB2 545 100% 0 0

Chromosomal Locations for CCDS 38815.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 96723887 96724047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96728118 96728322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96731366 96731439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96738975 96739039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96749146 96749243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96754056 96754221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96757935 96758056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96761861 96762124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96762732 96762872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96769589 96769823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96785054 96785160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1638 nt):
ATGTCTTCACCTTGGAAGACCTCGCAAAGTTCAGTGCCAATGCCGGAAATGATAGTGAAAATTGTTGGAA
GTAAACACTTTCGTTACTTCATAGAAAAGCCAATGAATAAGCAGAATGAGAAGTTGAAGACAGAACCTCA
AACCTCACTCCAGAAACCCAGGAATGATTATTCAAGACGGGTGAGCAGAGACCTGCCAGGACCCACTGAC
TCTTCTGAGCAACAAATAACTGCTAACCCAGCTGAGAAGGAAGAAAGCAAGCACCAAAGAAGCAGCCTAA
AACCCGAAAGCAATCAAAAGTTCTTAACCAGAGTATTCAGTAACAGGTTCCTGGATGGCAGGATTTCCTA
TGAGGCAAATGTCCACTGCAGCTCTGTACCAACAGGAGACCAATCACTATCCTATATGCATAGTCTCCCC
AGAAGAAAGTCTGTAGGCTGGTGCTTGGAACATACAGCAAAGGACAGCTCTGGCCAAGCAGAGGAAATTG
TCCAAAGGCCAAGTGTAATGACAAGAGAAGATTCTTTTCTAACCACATTGGTCAGAAGAGAACTCAACTC
ACGCCCATTGAGCTCCAATTTGTTGGACAAACTTCAGAAAGAGCTGAAGACTCTGGATCCCATCTCCTCA
GGCTTTCTCCATCAGTCGCAGCTGAGCTGCCTCTTCCTAAGGCATAAAGTCCCTCTGCCACTACTAACAG
TCAAGCTCCTCTGCCAAAGATTCTCTAGAAGGTGTTCTCCGGAAATGGTAAATTATGGAGAGGTACTCTG
TTTTTTGAAAGAAGCAACTAAAGATAATTTACAGCAAAATGGAACAGCTGGATATAGTAACTCAAGGAAA
ACTTCAAGTCCAAGCTACCATAAACAAAGCATTCCACCTCAAGATTCCAGCTTACTGTCTGAAGTGAACA
AGAGCCTGCTAGAGATTTTGAAGATGGCACTAAGACCATGCCAAGGCAAACTCAGCATAGACTGCCTCAA
CATGAGCTTTCGAAAAGAAGATCACTCATTCTCTGGCTGCCTACCCCTGCCCAAGGTCATATCTATATGT
AGCAAGCATGGACTGTATGTAACCATGACCCTGCTGGAAACATTGCTCCACCACCAAGAACTGGGTTACC
GAGGTGAAATAAAGTGGAAGAACTTTGTTAAGTGGCTGAACAGAGCTTCTGCTGATTTGTCATGTGACAT
GCCAGCAGGAAAGAATAAAAAGGAAACCCAAGGGGACTTGGTTGACATCCCTGAAAGACCCCAAAGAAAA
ACTGAACATGTGAAAACTCCAGAAGAAAATCTGCAGACAAAAAACCCTACCACTATGACGTCAGCACCAG
AAGACCCTGTGACCTTCTTTAAGAACAGGCCAGTCTCTCAGCCTGTTGAGCATCTGGCTGTGAAGAAGGA
TGGGCAATCAGAGTTATGGATAGACAGGTTCAGAAAGCTGGAAAATGCCCTTTACCTGTGTGACCTGAGC
AACACAGGAGTGCTGGAGCGGGAGCGAGCCAGGCGCCTCATTCACAACTACAACCTCATTTACAGCTTGT
CTCTGAGTCCCCGGAGAATCAACCAGGCCTTGCAAAGATACCGTTCTGGAGAAAACATAATCTTGGAGCC
AGCACTTCAGTACTTAAAGGAGCTGTAA

Translation (545 aa):
MSSPWKTSQSSVPMPEMIVKIVGSKHFRYFIEKPMNKQNEKLKTEPQTSLQKPRNDYSRRVSRDLPGPTD
SSEQQITANPAEKEESKHQRSSLKPESNQKFLTRVFSNRFLDGRISYEANVHCSSVPTGDQSLSYMHSLP
RRKSVGWCLEHTAKDSSGQAEEIVQRPSVMTREDSFLTTLVRRELNSRPLSSNLLDKLQKELKTLDPISS
GFLHQSQLSCLFLRHKVPLPLLTVKLLCQRFSRRCSPEMVNYGEVLCFLKEATKDNLQQNGTAGYSNSRK
TSSPSYHKQSIPPQDSSLLSEVNKSLLEILKMALRPCQGKLSIDCLNMSFRKEDHSFSGCLPLPKVISIC
SKHGLYVTMTLLETLLHHQELGYRGEIKWKNFVKWLNRASADLSCDMPAGKNKKETQGDLVDIPERPQRK
TEHVKTPEENLQTKNPTTMTSAPEDPVTFFKNRPVSQPVEHLAVKKDGQSELWIDRFRKLENALYLCDLS
NTGVLERERARRLIHNYNLIYSLSLSPRRINQALQRYRSGENIILEPALQYLKEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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