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Report for CCDS38611.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38611.1 Public Mus musculus 3 Cdc14a 23 108 98 CCDS HistoryNCBI Gene:229776Re-query CCDS DB by CCDS ID:38611.1Re-query CCDS DB by GeneID:229776See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38611.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090464.6 ENSMUSP00000087950.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090464.6Link to Ensembl Protein Viewer:ENSMUSP00000087950.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000090464Re-query CCDS DB by Protein ID:ENSMUSP00000087950
Original member Current member NCBI NM_001080818.2 NP_001074287.1 Accepted alive Link to Nucleotide Sequence:NM_001080818.2Link to Protein Sequence:NP_001074287.1Re-query CCDS DB by Nucleotide ID:NM_001080818Re-query CCDS DB by Protein ID:NP_001074287Link to BLAST:NP_001074287.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074287.1 603 Q6GQT0-1 603 100% 0 0

Chromosomal Locations for CCDS 38611.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 116274679 116274708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116293726 116294086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116294751 116294873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116297131 116297178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116298437 116298549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116308140 116308299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116322082 116322220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116328479 116328709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116332795 116332882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116348454 116348516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116351206 116351272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116366627 116366706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116392822 116392914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116404543 116404618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116422567 116422657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116423437 116423485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1812 nt):
ATGGCAGCGGAGTCTGGGGAACTAATCGGGGCTTGCGAGTTCATGAAAGATCGATTATATTTTGCTACTT
TAAGGAATAGACCAAAAAGCACAATAAATATCCACTATTTCTCCATCGACGAGGAGCTGGTCTATGAAAA
TTTCTATGCAGATTTTGGACCTCTGAACTTGGCAATGGTGTACAGATACTGCTGTAAGCTAAACAAGAAA
CTAAAATCATACAGTTTATCAAGAAAGAAGATAGTGCACTACACCTCTTTCGACCAGCGGAAAAGAGCAA
ACGCAGCATTCTTGATAGGTGCTTATGCCGTCATCTACTTAAAGAAGACACCAGAAGAAGCGTACAGAGC
TCTCCTGTCTGGCTCAAACCCTCCTTATCTTCCATTCAGGGATGCATCTTTTGGAAACTGCACTTACAAC
CTCACCGTCCTTGACTGTTTACAAGGAATCAGAAAGGGATTACAGCATGGGTTTTTTGACTTTGAGACGT
TTGATGCGGAAGAATATGAACATTATGAGCGAGTTGAAAACGGAGACTTCAACTGGATCGTTCCAGGAAA
GTTTTTAGCGTTCAGTGGACCGCATCCTAAAAGCAAGATTGAGAATGGTTACCCTCTCCACGCTCCCGAA
GCCTACTTTCCATACTTCAAAAAGAACAACGTGACCACGATCGTGAGATTGAACAAAAAGATCTACGAGG
CGAAGCGCTTCACAGACGCTGGCTTCGAGCACTATGACCTGTTCTTCATAGACGGCAGCACCCCCAGCGA
TAACATCGTGCGGAGATTCCTGAACATCTGTGAGAACACCGAGGGGGCCATCGCGGTCCACTGCAAAGCT
GGTCTGGGAAGAACCGGGACATTGATAGCCTGTTATGTCATGAAACACTACAGGTTTACACATGCTGAAA
TCATTGCTTGGATCAGAATTTGCCGACCAGGCTCCATCATCGGACCCCAGCAGCACTTCCTGAAAGAAAA
ACAAGCATCATTGTGGGTCCAAGGAGACATTTTTAGATCCAAACTAAAAAATAGACCATCCAGTGAGGGA
AGTATTACAAAAATTATTTCTACCCTGGATGATATGTCTATTGGTGCAAATTTATCCAAATTACAAAGCA
CAGAAAGGATTGGAGAGAATAATTTTGAAGACGAAGATATGGAAATTAAGAACAACGTAACGCAGGGAGA
CAAACTACGTGCCTTAAAAAGCCAGAGGCATCCCCGCTCCTCGCCATCCTGTGCATTTAGGTCAGATGAT
ATGAAAGGACACCAAAGGGCAATGGCCCAGACTTTCAGATTAAGTTCCTCACCGCAACCAACTATGTCGA
CCATGAAGACCTCCAAAGTGTGTTTGTCCCCTTCAGTGACAGCCAAAAAAATAAGCCGAGGTTCTTTGTC
TTCAGGAGCAAATATAAGAAGCTTCTCCATAAATTCCCGGCTAGCCAGTTCTCTAGGGAACTTGAACGCC
GGGACAGAAGAACCTGAGACCAAGAAGACCACATCACTCACCAAGGCCGCTTTCATAGCCAGCCCATTCA
CCAGCTTCTTGAATGGCAGCACCCAGACACCTGGCAGAAACTACCCTGAGCTCAACAACAACCAGTACAC
CAGAAGCAGCAACAGCAACAGCAGCAGCAGCAGCAGCGGTCTTGGGGGCAACCTGAACAGCTCTCCAGTC
CCCCAGAGCGCCAAGCCCGAGGAGCACACCACCATCCTTCGACCTTCCTTCCCGGGGTCACTCTCTTCCT
CCTCAGTGAGATTCCTGAGCCGTTCTATACCTTCCCTTCAGTCTGAATACGTTCATTACTAA

Translation (603 aa):
MAAESGELIGACEFMKDRLYFATLRNRPKSTINIHYFSIDEELVYENFYADFGPLNLAMVYRYCCKLNKK
LKSYSLSRKKIVHYTSFDQRKRANAAFLIGAYAVIYLKKTPEEAYRALLSGSNPPYLPFRDASFGNCTYN
LTVLDCLQGIRKGLQHGFFDFETFDAEEYEHYERVENGDFNWIVPGKFLAFSGPHPKSKIENGYPLHAPE
AYFPYFKKNNVTTIVRLNKKIYEAKRFTDAGFEHYDLFFIDGSTPSDNIVRRFLNICENTEGAIAVHCKA
GLGRTGTLIACYVMKHYRFTHAEIIAWIRICRPGSIIGPQQHFLKEKQASLWVQGDIFRSKLKNRPSSEG
SITKIISTLDDMSIGANLSKLQSTERIGENNFEDEDMEIKNNVTQGDKLRALKSQRHPRSSPSCAFRSDD
MKGHQRAMAQTFRLSSSPQPTMSTMKTSKVCLSPSVTAKKISRGSLSSGANIRSFSINSRLASSLGNLNA
GTEEPETKKTTSLTKAAFIASPFTSFLNGSTQTPGRNYPELNNNQYTRSSNSNSSSSSSGLGGNLNSSPV
PQSAKPEEHTTILRPSFPGSLSSSSVRFLSRSIPSLQSEYVHY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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