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Report for CCDS38598.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38598.1 Public Mus musculus 3 Cyb561d1 23 108 98 CCDS HistoryNCBI Gene:72023Re-query CCDS DB by CCDS ID:38598.1Re-query CCDS DB by GeneID:72023See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38598.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106655.1 ENSMUSP00000102266.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106655.1Link to Ensembl Protein Viewer:ENSMUSP00000102266.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106655Re-query CCDS DB by Protein ID:ENSMUSP00000102266
Original member Current member NCBI NM_001081320.2 NP_001074789.2 Accepted alive Link to Nucleotide Sequence:NM_001081320.2Link to Protein Sequence:NP_001074789.2Re-query CCDS DB by Nucleotide ID:NM_001081320Re-query CCDS DB by Protein ID:NP_001074789Link to BLAST:NP_001074789.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074789.2 229 A2AE42 229 100% 0 0

Chromosomal Locations for CCDS 38598.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 108199212 108199715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108200125 108200162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108200627 108200774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (690 nt):
ATGCATTCCATGGAGGTAGGTCTGGTTCCCGCTCCAGCGAGGGAGCCGAGACTGACCCGCTGGCTGCGGA
GAGGCAGTGGGATCTTGGCGCACCTGATAGCTTTGGGCTTCACCATCTTTCTGACTGTGCTGTCCCGGCC
CGGAACCAGTCTTTTCTCCTGGCACCCTGTGTTCATGGCCTTGGCGTTCTGTCTCTGCATGGCTGAAGCT
ATTCTACTCTTCTCACCTGAGCACTCCCTGTTCTTCTTCTGCTCTCGAAAAACCCGGATTCGACTCCACT
GGGCAGGGCAGACCATGGCCATCCTCTGTGCTGTCCTAGGCTTGGGCTTCATCATTTCCAGCAAGATCCG
AAGTGAGATGTCCCATTTGGTGTCCTGGCACAGCTGGATAGGAGCCTTGACACTGTTGGCCACTGGAGGA
CAGGCACTGTGTGGGCTCTGCCTCCTCTGTCCACGAGCAGCCCGGGTCTCAAGGGTGGCTCGCCTCAAGC
TCTACCATCTGACGTGTGGCCTGGTTGTCTACCTGATGGCTACAGTAACGGTGCTCTTGGGCATGTACTC
AGTGTGGTTCCAGGCCCAGATCAAAGGTACAGCCTGGTACCTGTGCCTGGGACTACCATTGTACCCAGCC
CTGGTGATCATGCACCAGATCTCCAGCTCCTACTTGCCAAGGAAGAAGGTGGAGATATGA

Translation (229 aa):
MHSMEVGLVPAPAREPRLTRWLRRGSGILAHLIALGFTIFLTVLSRPGTSLFSWHPVFMALAFCLCMAEA
ILLFSPEHSLFFFCSRKTRIRLHWAGQTMAILCAVLGLGFIISSKIRSEMSHLVSWHSWIGALTLLATGG
QALCGLCLLCPRAARVSRVARLKLYHLTCGLVVYLMATVTVLLGMYSVWFQAQIKGTAWYLCLGLPLYPA
LVIMHQISSSYLPRKKVEI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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