NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS38492.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38492.1 Public Mus musculus 3 Flad1 23 108 98 CCDS HistoryNCBI Gene:319945Re-query CCDS DB by CCDS ID:38492.1Re-query CCDS DB by GeneID:319945See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38492.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107426.7 ENSMUSP00000103049.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107426.7Link to Ensembl Protein Viewer:ENSMUSP00000103049.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107426Re-query CCDS DB by Protein ID:ENSMUSP00000103049
Original member Current member EBI ENSMUST00000129308.8 ENSMUSP00000122252.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000129308.8Link to Ensembl Protein Viewer:ENSMUSP00000122252.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000129308Re-query CCDS DB by Protein ID:ENSMUSP00000122252
Original member Current member NCBI NM_001362375.1 NP_001349304.1 Accepted alive Link to Nucleotide Sequence:NM_001362375.1Link to Protein Sequence:NP_001349304.1Re-query CCDS DB by Nucleotide ID:NM_001362375Re-query CCDS DB by Protein ID:NP_001349304Link to BLAST:NP_001349304.1
Original member Current member NCBI NM_001362376.1 NP_001349305.1 Accepted alive Link to Nucleotide Sequence:NM_001362376.1Link to Protein Sequence:NP_001349305.1Re-query CCDS DB by Nucleotide ID:NM_001362376Re-query CCDS DB by Protein ID:NP_001349305Link to BLAST:NP_001349305.1
Original member Current member NCBI NM_177041.4 NP_796015.2 Accepted alive Link to Nucleotide Sequence:NM_177041.4Link to Protein Sequence:NP_796015.2Re-query CCDS DB by Nucleotide ID:NM_177041Re-query CCDS DB by Protein ID:NP_796015Link to BLAST:NP_796015.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349304.1 492 Q8R123-1 492 100% 0 0
NP_001349305.1 492 Q8R123-1 492 100% 0 0
NP_796015.2 492 Q8R123-1 492 100% 0 0

Chromosomal Locations for CCDS 38492.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 89403166 89403301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89403396 89403469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89405581 89405770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89405855 89405953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89407409 89407556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89408422 89409166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89411158 89411244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1479 nt):
ATGGCATCTAGGGCCTCTGAACTGCCCCCAGGATCAGGGCGCAGCGTGACAGCAGGCATCATCATTGTTG
GAGATGAGATCCTTAAGGGACACACGCAAGATACCAACACTTACTTTCTTTGCCGGACCCTGCGCTCCCT
GGGGGTCCAGGTTTGCCGAGTCTCTGTTGTGCCTGATGAAGTAGCCACCATTGCATCCGAGGTCAACTCA
TTCTCCAGGCGCTTCACTCACGTCCTCACCGCGGGGGGCATCGGCCCCACTCATGATGATGTTACCTTTG
AGGCAGTGGCACAGGCTTTTGGGGAGGAGCTCAAACCACACCCTGAGCTCCAAGCAGCCATCAAAACCCT
AGGAGGGGAGGGTTGGGAGAAGCTGTCGATGGTGCCCTCCTCTGCCCGCCTGCATTACGGTACAGATCCT
CGAACCGGCCACCCCTTCAGATTCCCGCTGGTCTCTGTCCGAAATGTCTACCTCTTCCCAGGAATTCCGG
AGCTTCTGCGACGAGTTTTGGAGGGACTGAAAGGGCTGTTCCAAAACACAGCTGTGCAGTTCCACCTGAA
GGAGTTGTATGTGGCCGCGTCAGAGGGCTCTATCGCCCCCATCCTGTCGGAGGCTCAGGCCCACTTTGGG
CGTAGGCTTAGCCTGGGTTCCTACCCTGACTGGAGCAGCAACTACTTTCAAGTGAAGCTGATTCTAGACT
CCGAGGAAAAAGAGCCCTTGGAGGAATGTCTGGCCTATCTGACTGCACGTCTGCCCCAAGGATCACTGGT
CCCCTACCAGCCCGATGCTGTTGAGAAGGCTGGTGAGGCTGTGTACAAACTCGCGGAGTCAGGCTCTTGT
CTGGGGAAGAAGGTAGCAGGTGCCCTACAGACCATCGAGACTGCCCTGGCTCAGTACCATCTCTCCCAGC
TCTGCGTGGGCTTCAATGGGGGCAAGGACTGCACCGCACTCCTGCACCTCTTCCATGCAGCCGTGCAGAG
AAAATTTCCTGATGTTCCAAAACCTCTCCAGATCCTGTACATTCGTAGCATCTCGCCCTTCCCTGAGTTG
GAACAGTTTCTGCAGGACACCATCAAGAGGTATAATCTCCAGGTGTTAGAAGCCGAGGGTAACATGAAGC
AGGCCCTGGGTGAGCTTCAGGAAAAGCACCCCCAGCTGGAGGCTGTCCTGATGGGCACTCGACGGACTGA
CCCCTACTCCTGTAGCCTCAGCCATTTCAGTCCCACCGACCCTGGCTGGCCTTCATTCATGAGAATCAAC
CCGCTGCTGGACTGGACCTACAGAAACATCTGGGAGTTTCTGCGGCAGCTGTTTGTCCCATACTGCATCC
TATATGACAGAGGGTACACATCCCTGGGGAGTCGGGAAAACACAACGCAGAATCCGGCCCTGAAGTGCCT
GAGCCCAGGAGGACACCCTGTCTACCGTCCAGCATACCTACTGGAGAATGAGGATGAGGAGAGAAATTCC
AGAATGTGA

Translation (492 aa):
MASRASELPPGSGRSVTAGIIIVGDEILKGHTQDTNTYFLCRTLRSLGVQVCRVSVVPDEVATIASEVNS
FSRRFTHVLTAGGIGPTHDDVTFEAVAQAFGEELKPHPELQAAIKTLGGEGWEKLSMVPSSARLHYGTDP
RTGHPFRFPLVSVRNVYLFPGIPELLRRVLEGLKGLFQNTAVQFHLKELYVAASEGSIAPILSEAQAHFG
RRLSLGSYPDWSSNYFQVKLILDSEEKEPLEECLAYLTARLPQGSLVPYQPDAVEKAGEAVYKLAESGSC
LGKKVAGALQTIETALAQYHLSQLCVGFNGGKDCTALLHLFHAAVQRKFPDVPKPLQILYIRSISPFPEL
EQFLQDTIKRYNLQVLEAEGNMKQALGELQEKHPQLEAVLMGTRRTDPYSCSLSHFSPTDPGWPSFMRIN
PLLDWTYRNIWEFLRQLFVPYCILYDRGYTSLGSRENTTQNPALKCLSPGGHPVYRPAYLLENEDEERNS
RM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH