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Report for CCDS38474.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38474.1 Public Mus musculus 3 Pear1 23 108 98 CCDS HistoryNCBI Gene:73182Re-query CCDS DB by CCDS ID:38474.1Re-query CCDS DB by GeneID:73182See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38474.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029714.14 ENSMUSP00000029714.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029714.14Link to Ensembl Protein Viewer:ENSMUSP00000029714.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000029714Re-query CCDS DB by Protein ID:ENSMUSP00000029714
Original member Current member EBI ENSMUST00000079083.11 ENSMUSP00000078090.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079083.11Link to Ensembl Protein Viewer:ENSMUSP00000078090.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000079083Re-query CCDS DB by Protein ID:ENSMUSP00000078090
Original member Current member EBI ENSMUST00000090981.12 ENSMUSP00000088503.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090981.12Link to Ensembl Protein Viewer:ENSMUSP00000088503.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000090981Re-query CCDS DB by Protein ID:ENSMUSP00000088503
Original member Current member EBI ENSMUST00000174759.7 ENSMUSP00000133323.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000174759.7Link to Ensembl Protein Viewer:ENSMUSP00000133323.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000174759Re-query CCDS DB by Protein ID:ENSMUSP00000133323
Original member Current member EBI ENSMUST00000172621.7 ENSMUSP00000133474.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172621.7Link to Ensembl Protein Viewer:ENSMUSP00000133474.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172621Re-query CCDS DB by Protein ID:ENSMUSP00000133474
Original member Current member NCBI NM_001032413.1 NP_001027585.1 Accepted alive Link to Nucleotide Sequence:NM_001032413.1Link to Protein Sequence:NP_001027585.1Re-query CCDS DB by Nucleotide ID:NM_001032413Re-query CCDS DB by Protein ID:NP_001027585Link to BLAST:NP_001027585.1
Original member Current member NCBI NM_001032414.1 NP_001027586.1 Accepted alive Link to Nucleotide Sequence:NM_001032414.1Link to Protein Sequence:NP_001027586.1Re-query CCDS DB by Nucleotide ID:NM_001032414Re-query CCDS DB by Protein ID:NP_001027586Link to BLAST:NP_001027586.1
Original member Current member NCBI NM_028460.2 NP_082736.1 Accepted alive Link to Nucleotide Sequence:NM_028460.2Link to Protein Sequence:NP_082736.1Re-query CCDS DB by Nucleotide ID:NM_028460Re-query CCDS DB by Protein ID:NP_082736Link to BLAST:NP_082736.1
Original member Current member NCBI NM_152799.2 NP_690012.2 Accepted alive Link to Nucleotide Sequence:NM_152799.2Link to Protein Sequence:NP_690012.2Re-query CCDS DB by Nucleotide ID:NM_152799Re-query CCDS DB by Protein ID:NP_690012Link to BLAST:NP_690012.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001027585.1 1034 Q8VIK5-1 1034 100% 0 0
NP_001027586.1 1034 Q8VIK5-1 1034 100% 0 0
NP_082736.1 1034 Q8VIK5-1 1034 100% 0 0
NP_690012.2 1034 Q8VIK5-1 1034 100% 0 0

Chromosomal Locations for CCDS 38474.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 87750146 87750297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87751110 87751355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87751440 87751514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87751650 87751773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87751854 87751942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87752107 87752319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87752472 87752600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87752708 87752836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87753766 87753894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87754064 87754210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87754293 87754395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87754498 87754661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87755905 87756025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87756106 87756280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87756552 87756764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87756849 87756985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87757144 87757264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87757927 87758170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87758325 87758417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87759094 87759194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87759477 87759581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87760224 87760318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3105 nt):
ATGCCACTTTGTCCCCTCCTCCTCCTGGCCCTAGGCCTGCGTCTGACTGGGACACTCAACTCCAATGATC
CCAATGTCTGTACCTTTTGGGAAAGCTTCACCACGACCACTAAGGAGTCCCACCTGCGCCCCTTCAGCCT
GCTCCCAGCTGAGTCCTGCCACAGGCCCTGGGAGGACCCCCACACCTGTGCCCAGCCTACGGTTGTCTAC
CGGACTGTGTACCGTCAGGTGGTGAAGATGGACTCCCGCCCACGCCTGCAGTGCTGTAGGGGTTACTACG
AGAGCAGAGGGGCCTGTGTCCCACTCTGTGCCCAGGAGTGTGTCCATGGTCGCTGTGTGGCTCCGAATCA
GTGCCAGTGTGCACCAGGCTGGCGGGGTGGCGACTGCTCCAGCGAGTGTGCCCCGGGAATGTGGGGACCA
CAGTGTGACAAGTTCTGCCACTGTGGCAACAACAGTTCCTGTGATCCCAAGAGTGGGACGTGCTTTTGCC
CCTCTGGCCTGCAGCCCCCCAACTGCCTTCAGCCCTGCCCTGCCGGCCACTATGGTCCTGCCTGCCAGTT
TGATTGCCAGTGCTATGGGGCATCCTGTGACCCCCAGGATGGAGCCTGTTTCTGCCCTCCAGGGAGAGCA
GGACCCAGCTGTAATGTGCCCTGTTCACAGGGCACTGATGGCTTCTTCTGCCCCAGAACCTATCCTTGCC
AAAATGGAGGTGTTCCTCAGGGCTCCCAAGGCTCCTGCAGCTGCCCACCGGGCTGGATGGGTGTCATTTG
TTCCCTGCCATGCCCAGAGGGTTTCCATGGACCCAACTGTACTCAGGAATGTCGCTGCCACAACGGTGGC
CTCTGTGACAGGTTTACTGGGCAGTGCCACTGTGCTCCTGGCTATATCGGGGATCGGTGCCAAGAAGAGT
GCCCCGTGGGCCGCTTCGGTCAAGACTGTGCTGAGACCTGTGACTGTGCTCCTGGCGCCCGTTGCTTTCC
TGCTAATGGCGCGTGTCTGTGTGAACATGGCTTCACAGGCGACCGCTGCACTGAGCGCCTCTGTCCGGAT
GGCCGCTATGGTCTGAGCTGCCAGGAGCCCTGCACCTGCGACCCAGAACACAGTCTCAGCTGCCACCCGA
TGCACGGCGAGTGCTCCTGCCAGCCAGGTTGGGCGGGCCTCCACTGCAACGAGAGCTGCCCTCAGGACAC
GCATGGCCCGGGCTGCCAGGAGCACTGCCTCTGTCTGCACGGAGGGCTCTGCCTTGCCGACAGCGGCCTC
TGCCGGTGCGCGCCGGGATACACGGGACCTCACTGCGCTAACCTATGTCCACCGGACACTTACGGGATCA
ACTGTTCCTCCCGCTGCTCCTGTGAAAATGCCATTGCCTGCTCTCCCATCGACGGCACGTGCATCTGCAA
GGAAGGTTGGCAGCGTGGTAACTGCTCTGTTCCCTGTCCCCTTGGCACCTGGGGCTTCAATTGCAATGCC
AGTTGCCAGTGTGCCCACGACGGAGTCTGCAGCCCCCAAACTGGAGCCTGTACTTGCACCCCTGGGTGGC
ATGGTGCTCACTGCCAGCTTCCCTGCCCGAAGGGACAGTTTGGTGAAGGCTGTGCCAGTGTCTGTGACTG
TGACCACTCTGATGGCTGTGACCCTGTTCATGGACAGTGCCGATGTCAGGCTGGTTGGATGGGCACACGC
TGCCACCTGCCTTGCCCGGAGGGCTTTTGGGGAGCCAACTGCAGTAACACCTGTACCTGCAAGAATGGTG
GTACCTGTGTGTCTGAGAATGGCAACTGCGTGTGCGCACCAGGGTTCCGAGGCCCCTCCTGCCAGAGGCC
CTGCCCGCCTGGTCGCTATGGCAAACGCTGTGTGCAATGCAAGTGTAACAACAACCATTCTTCCTGCCAC
CCATCGGACGGGACCTGCTCCTGCCTGGCGGGCTGGACAGGCCCTGACTGCTCCGAGGCATGTCCCCCAG
GCCACTGGGGACTCAAATGCTCCCAACTCTGCCAGTGTCATCATGGTGGGACCTGCCACCCCCAGGATGG
GAGCTGTATCTGCACGCCAGGCTGGACTGGACCCAACTGCTTGGAAGGCTGCCCACCAAGAATGTTTGGT
GTCAACTGCTCCCAGCTATGTCAGTGTGATCTCGGAGAGATGTGCCACCCAGAGACTGGGGCTTGTGTCT
GTCCCCCAGGACACAGTGGTGCAGACTGCAAAATGGGAAGCCAGGAGTCCTTCACCATAATGCCCACCTC
TCCCGTGACCCATAACTCACTGGGTGCAGTGATTGGCATTGCAGTACTGGGAACCCTCGTGGTGGCCCTG
ATAGCACTGTTCATTGGCTACCGCCAGTGGCAAAAGGGCAAGGAACATGAGCACTTGGCAGTGGCTTACA
GCACTGGGCGGCTGGATGGCTCTGATTACGTCATGCCAGATGTCTCTCCGAGCTATAGTCACTACTACTC
CAACCCCAGCTACCACACACTGTCTCAGTGTTCTCCTAACCCCCCACCCCCTAACAAGGTCCCAGGCAGT
CAGCTCTTTGTCAGCTCCCAGGCCCCTGAGCGGCCAAGCAGAGCCCACGGGCGTGAGAACCATGTCACAC
TGCCCGCTGACTGGAAGCACCGCCGGGAGCCCCATGAAAGAGGCGCCAGCCACCTGGACCGAAGCTATAG
CTGTAGCTATAGCCACAGGAATGGCCCGGGACCATTCTGTCATAAAGGTCCCATCTCTGAAGAGGGACTA
GGGGCAAGCGTTATGTCCCTGAGCAGTGAGAACCCCTATGCTACCATCCGAGACCTGCCCAGCCTGCCTG
GGGAACCCCGAGAAAGCGGCTATGTGGAGATGAAAGGACCTCCATCAGTGTCCCCTCCCAGGCAGTCTCT
TCATCTCCGGGACAGGCAGCAGCGGCAACTGCAGCCACAGAGGGACAGTGGCACCTATGAGCAGCCCAGC
CCCTTGAGCCATAATGAAGAGTCTTTGGGCTCCACGCCCCCGCTTCCTCCAGGCCTGCCTCCTGGTCACT
ACGACTCCCCCAAGAACAGCCATATCCCTGGACACTATGACTTGCCTCCAGTACGGCATCCTCCATCCCC
TCCATCCCGGCGCCAGGACCGCTGA

Translation (1034 aa):
MPLCPLLLLALGLRLTGTLNSNDPNVCTFWESFTTTTKESHLRPFSLLPAESCHRPWEDPHTCAQPTVVY
RTVYRQVVKMDSRPRLQCCRGYYESRGACVPLCAQECVHGRCVAPNQCQCAPGWRGGDCSSECAPGMWGP
QCDKFCHCGNNSSCDPKSGTCFCPSGLQPPNCLQPCPAGHYGPACQFDCQCYGASCDPQDGACFCPPGRA
GPSCNVPCSQGTDGFFCPRTYPCQNGGVPQGSQGSCSCPPGWMGVICSLPCPEGFHGPNCTQECRCHNGG
LCDRFTGQCHCAPGYIGDRCQEECPVGRFGQDCAETCDCAPGARCFPANGACLCEHGFTGDRCTERLCPD
GRYGLSCQEPCTCDPEHSLSCHPMHGECSCQPGWAGLHCNESCPQDTHGPGCQEHCLCLHGGLCLADSGL
CRCAPGYTGPHCANLCPPDTYGINCSSRCSCENAIACSPIDGTCICKEGWQRGNCSVPCPLGTWGFNCNA
SCQCAHDGVCSPQTGACTCTPGWHGAHCQLPCPKGQFGEGCASVCDCDHSDGCDPVHGQCRCQAGWMGTR
CHLPCPEGFWGANCSNTCTCKNGGTCVSENGNCVCAPGFRGPSCQRPCPPGRYGKRCVQCKCNNNHSSCH
PSDGTCSCLAGWTGPDCSEACPPGHWGLKCSQLCQCHHGGTCHPQDGSCICTPGWTGPNCLEGCPPRMFG
VNCSQLCQCDLGEMCHPETGACVCPPGHSGADCKMGSQESFTIMPTSPVTHNSLGAVIGIAVLGTLVVAL
IALFIGYRQWQKGKEHEHLAVAYSTGRLDGSDYVMPDVSPSYSHYYSNPSYHTLSQCSPNPPPPNKVPGS
QLFVSSQAPERPSRAHGRENHVTLPADWKHRREPHERGASHLDRSYSCSYSHRNGPGPFCHKGPISEEGL
GASVMSLSSENPYATIRDLPSLPGEPRESGYVEMKGPPSVSPPRQSLHLRDRQQRQLQPQRDSGTYEQPS
PLSHNEESLGSTPPLPPGLPPGHYDSPKNSHIPGHYDLPPVRHPPSPPSRRQDR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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