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Report for CCDS38450.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38450.1 Public Mus musculus 3 Mfsd1 23 108 98 CCDS HistoryNCBI Gene:66868Re-query CCDS DB by CCDS ID:38450.1Re-query CCDS DB by GeneID:66868See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38450.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029344.9 ENSMUSP00000029344.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029344.9Link to Ensembl Protein Viewer:ENSMUSP00000029344.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000029344Re-query CCDS DB by Protein ID:ENSMUSP00000029344
Original member Current member NCBI NM_025813.3 NP_080089.1 Accepted alive Link to Nucleotide Sequence:NM_025813.3Link to Protein Sequence:NP_080089.1Re-query CCDS DB by Nucleotide ID:NM_025813Re-query CCDS DB by Protein ID:NP_080089Link to BLAST:NP_080089.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080089.1 464 Q9DC37 464 100% 0 0

Chromosomal Locations for CCDS 38450.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 67582818 67582977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67584644 67584696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67585598 67585710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67587301 67587343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67587918 67587985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67589831 67589939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67592570 67592672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67594299 67594397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67594768 67594879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67596169 67596225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67596594 67596750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67598028 67598125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67599940 67600052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67600593 67600640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67601322 67601379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67602695 67602698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1395 nt):
ATGGAGGACGAGGATGGGGAAGATCGGGCGCTGCTTGGGGGCCGCCGCGAGGCGGACAGCGCAGTCCATG
GCGCCCCTCGCGCTCTGTCCGCGCTCTGCGACCCCAGCCGCCTGGCGCACCGGCTCGTGGTGCTGTCGCT
CATGTGCTTCCTTGGCTTCGGCAGCTATTTCTGCTATGACAACCCCGCTGCCCTTCAGACTCAGGTGAAA
CGGGACATGCAAGTGAACACCACGAAATTCATGCTGCTGTATGCCTGGTATTCTTGGCCCAATGTAGTTT
TGTGTTTCTTGGGTGGCTTTTTGATAGACCGCATATTTGGAATACGATGGGGCACAGTTATTTTTAGCTG
CTTTGTTTGCATCGGACAGGTTATATTTGCTCTGGGTGGTATATTTAATGCATTTTGGCTGATGGAGCTT
GGGAGGTTTGTGTTTGGGATTGGTGGAGAGTCCTTAGCAGTTGCCCAGAATACATATGCTGTGAGTTGGT
TTAAAGGCAAAGAATTAAACCTGGTGTTTGGACTTCAACTCAGCATGGCCAGAATTGGAAGCACAGTGAA
TATGAACCTCATGGGATGGCTGTATGGGAAGATTGAAGCATTACTGGGCTCAGCTGGCCACATGACCCTG
GGCGTGACACTTATGATTGGGTGTATAACGTGCATTTTTTCACTAATCTGTGCTTTGGCTCTTGCTTATT
TGGATCGGAGAGCAGAGAAAATACTTCATAAAGAACAAGGGAAAACAGGTGAAGTCATTAAGCTGAGGGA
TATAAAGGACTTCTCGTTACCCCTGATCCTGGTCTTCGTCATCTGTGTCTGCTACTACGTGGCGGTGTTC
CCGTTCATCGGGCTGGGCAAAGTTTTCTTCATGGAGAAATTCAGATTCTCTTCCCAGTCAGCAAGTGCAA
TTAACAGTATCGTGTATATCATATCAGCTCCCATGTCTCCATTATTTGGACTCTTGGTGGATAAAACAGG
CAAGAACATCATCTGGGTCCTGTATGCGGTGGCCGCCACCCTCGTGTCCCACATGATGCTGGCCTTCACC
TTTTGGAACCCATGGATTGCTATGTGTCTCCTGGGGTTCTCCTACTCATTGCTGGCCTGTGCATTGTGGC
CAATGGTGGCATTCATAGTTCCTGAACACCAGCTGGGGACTGCATATGGATTCATGCAGTCTATTCAGAA
CCTCGGGCTGGCCGTCATCGCTATCCTTGCTGGCATGATCCTGGACTCGAAGGGATACTTGCTGCTGGAG
GTGTTCTTCATTGCCTGTGTTTCTTTGTCACTGCTGGCTGTGGTCTGTCTGTACTTGGTGAACCGTGCCC
AAGGAGGGAATCTAAATTATTCTGCAAAACAAAGGGAACGGATGAAGCTCTCTCATCCAGAGTAA

Translation (464 aa):
MEDEDGEDRALLGGRREADSAVHGAPRALSALCDPSRLAHRLVVLSLMCFLGFGSYFCYDNPAALQTQVK
RDMQVNTTKFMLLYAWYSWPNVVLCFLGGFLIDRIFGIRWGTVIFSCFVCIGQVIFALGGIFNAFWLMEL
GRFVFGIGGESLAVAQNTYAVSWFKGKELNLVFGLQLSMARIGSTVNMNLMGWLYGKIEALLGSAGHMTL
GVTLMIGCITCIFSLICALALAYLDRRAEKILHKEQGKTGEVIKLRDIKDFSLPLILVFVICVCYYVAVF
PFIGLGKVFFMEKFRFSSQSASAINSIVYIISAPMSPLFGLLVDKTGKNIIWVLYAVAATLVSHMMLAFT
FWNPWIAMCLLGFSYSLLACALWPMVAFIVPEHQLGTAYGFMQSIQNLGLAVIAILAGMILDSKGYLLLE
VFFIACVSLSLLAVVCLYLVNRAQGGNLNYSAKQRERMKLSHPE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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