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Report for CCDS3837.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3837.1 Public Homo sapiens 4 PRIMPOL 24 110 108 CCDS HistoryNCBI Gene:201973Re-query CCDS DB by CCDS ID:3837.1Re-query CCDS DB by GeneID:201973See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3837.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000314970.11 ENSP00000313816.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000314970.11Link to Ensembl Protein Viewer:ENSP00000313816.6Re-query CCDS DB by Nucleotide ID:ENST00000314970Re-query CCDS DB by Protein ID:ENSP00000313816
Original member Current member EBI ENST00000503752.5 ENSP00000420860.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000503752.5Link to Ensembl Protein Viewer:ENSP00000420860.1Re-query CCDS DB by Nucleotide ID:ENST00000503752Re-query CCDS DB by Protein ID:ENSP00000420860
Original member Current member NCBI NM_001345895.2 NP_001332824.1 Accepted alive Link to Nucleotide Sequence:NM_001345895.2Link to Protein Sequence:NP_001332824.1Re-query CCDS DB by Nucleotide ID:NM_001345895Re-query CCDS DB by Protein ID:NP_001332824Link to BLAST:NP_001332824.1
Original member Current member NCBI NM_152683.4 NP_689896.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152683.4Link to Protein Sequence:NP_689896.1Re-query CCDS DB by Nucleotide ID:NM_152683Re-query CCDS DB by Protein ID:NP_689896Link to BLAST:NP_689896.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001332824.1 560 Q96LW4-1 560 100% 0 0
NP_689896.1 560 Q96LW4-1 560 100% 0 0

Chromosomal Locations for CCDS 3837.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 184657141 184657320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184659340 184659437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184661774 184661903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184665917 184666064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184672173 184672460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184678232 184678394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184682248 184682336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184685409 184685498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184685576 184685684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184691499 184691581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184691666 184691712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184694522 184694779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1683 nt):
ATGAATAGAAAATGGGAAGCAAAACTGAAGCAAATTGAAGAACGAGCATCTCATTATGAGAGGAAACCGT
TGTCCTCAGTGTATAGACCAAGATTGTCCAAGCCAGAAGAACCACCCTCCATCTGGAGACTATTTCATCG
ACAAGCTCAAGCTTTTAATTTTGTTAAAAGCTGTAAAGAAGACGTTCATGTATTTGCTTTGGAATGCAAA
GTAGGAGATGGACAACGTATTTACCTTGTGACAACCTATGCTGAATTTTGGTTTTACTATAAATCCAGAA
AAAATCTCTTACACTGCTATGAAGTTATTCCTGAAAATGCTGTGTGCAAGCTTTATTTTGATTTGGAATT
TAACAAACCTGCCAACCCAGGAGCTGATGGGAAAAAGATGGTTGCATTACTCATTGAGTATGTGTGTAAA
GCACTTCAAGAGTTATACGGTGTTAATTGCTCAGCTGAAGATGTTTTGAACTTGGATTCTAGCACTGATG
AAAAATTCAGCCGGCATTTAATATTTCAGCTCCATGATGTGGCATTTAAAGATAATATTCATGTTGGTAA
TTTTTTGAGAAAAATTTTGCAGCCTGCTCTTGACTTGCTTGGCAGTGAAGATGATGATAGCGCTCCAGAG
ACAACAGGCCATGGATTTCCCCATTTTTCAGAAGCACCTGCAAGACAAGGATTTTCTTTCAATAAAATGT
TCACAGAAAAGGCTACAGAGGAAAGCTGGACATCGAATTCAAAGAAACTGGAGAGGCTGGGGTCAGCTGA
GCAAAGCAGTCCTGACCTTTCATTTCTAGTTGTGAAGAATAACATGGGAGAGAAGCATCTTTTTGTAGAT
CTCGGAGTTTATACAAGAAATAGAAACTTTCGGCTATATAAATCATCAAAAATTGGAAAGCGTGTGGCTT
TGGAGGTTACTGAAGATAACAAATTTTTTCCTATACAGTCAAAAGATGTTTCTGACGAATATCAATATTT
TCTCTCTTCTTTGGTCAGCAATGTCAGGTTCTCAGATACTTTACGAATTCTTACATGTGAGCCATCTCAG
AATAAACAAAAAGGAGTTGGATATTTTAACAGTATCGGCACTTCAGTAGAAACCATTGAAGGTTTTCAGT
GTTCTCCCTATCCTGAAGTTGATCATTTTGTTCTTTCTTTGGTGAATAAAGATGGCATTAAAGGAGGAAT
TCGGCGTTGGAACTACTTTTTCCCAGAAGAATTACTGGTTTATGATATTTGTAAATATCGGTGGTGTGAA
AACATTGGAAGAGCCCATAAGAGTAATAATATAATGATTCTGGTTGATCTGAAAAATGAAGTTTGGTATC
AAAAATGTCATGACCCTGTATGTAAAGCAGAAAACTTCAAATCTGACTGTTTCCCATTACCTGCTGAAGT
ATGTCTCCTGTTTCTTTTCAAAGAGGAAGAAGAGTTTACAACAGATGAAGCAGATGAAACTAGGAGCAAT
GAAACCCAGAATCCTCATAAACCATCACCTAGCAGGCTGTCAACAGGTGCATCTGCTGATGCTGTCTGGG
ATAATGGCATTGATGATGCTTATTTTTTAGAAGCTACTGAAGATGCTGAATTAGCTGAAGCTGCAGAGAA
CAGTCTTCTCAGTTATAACAGTGAAGTGGATGAAATTCCTGATGAACTAATTATAGAAGTATTACAAGAG
TAA

Translation (560 aa):
MNRKWEAKLKQIEERASHYERKPLSSVYRPRLSKPEEPPSIWRLFHRQAQAFNFVKSCKEDVHVFALECK
VGDGQRIYLVTTYAEFWFYYKSRKNLLHCYEVIPENAVCKLYFDLEFNKPANPGADGKKMVALLIEYVCK
ALQELYGVNCSAEDVLNLDSSTDEKFSRHLIFQLHDVAFKDNIHVGNFLRKILQPALDLLGSEDDDSAPE
TTGHGFPHFSEAPARQGFSFNKMFTEKATEESWTSNSKKLERLGSAEQSSPDLSFLVVKNNMGEKHLFVD
LGVYTRNRNFRLYKSSKIGKRVALEVTEDNKFFPIQSKDVSDEYQYFLSSLVSNVRFSDTLRILTCEPSQ
NKQKGVGYFNSIGTSVETIEGFQCSPYPEVDHFVLSLVNKDGIKGGIRRWNYFFPEELLVYDICKYRWCE
NIGRAHKSNNIMILVDLKNEVWYQKCHDPVCKAENFKSDCFPLPAEVCLLFLFKEEEEFTTDEADETRSN
ETQNPHKPSPSRLSTGASADAVWDNGIDDAYFLEATEDAELAEAAENSLLSYNSEVDEIPDELIIEVLQE


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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