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Report for CCDS38164.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38164.1 Public Mus musculus 2 Slc43a3 23 108 98 CCDS HistoryNCBI Gene:58207Re-query CCDS DB by CCDS ID:38164.1Re-query CCDS DB by GeneID:58207See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38164.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090726.5 ENSMUSP00000088227.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090726.5Link to Ensembl Protein Viewer:ENSMUSP00000088227.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000090726Re-query CCDS DB by Protein ID:ENSMUSP00000088227
Original member NCBI NM_021398.3 NP_067373.2 Updated not alive Link to Nucleotide Sequence:NM_021398.3Link to Protein Sequence:NP_067373.2Re-query CCDS DB by Nucleotide ID:NM_021398Re-query CCDS DB by Protein ID:NP_067373
Current member NCBI NM_021398.4 NP_067373.2 Accepted alive Link to Nucleotide Sequence:NM_021398.4Link to Protein Sequence:NP_067373.2Re-query CCDS DB by Nucleotide ID:NM_021398Re-query CCDS DB by Protein ID:NP_067373Link to BLAST:NP_067373.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067373.2 502 A2AVZ9-1 502 100% 0 0

Chromosomal Locations for CCDS 38164.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 84937686 84937869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84938223 84938352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84940981 84941027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84944242 84944318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84944518 84944610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84946840 84946979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84948335 84948432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84949973 84950191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84950421 84950540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84955431 84955617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84956272 84956386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84957686 84957784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1509 nt):
ATGGCAAGCAAGGGCTTGCCCCTTTACTTGGCCACCTTGTTGACTGGACTCTTGGAATGCATCGGTTTTG
CTGGTGTCCTCTTTGGCTGGACTTCACTGTTGTTTGTGTTCAAAGCAGAAAACTACTTTTCAGAGCCCTG
TGAACAGGACTGCTTGCTCCAGAGCAATGTAACAGGGCCTTCTGATTTAAAAGCGCAGGATGAGAAGTTC
TCACTCATCTTTACCCTGGCATCCTTCATGAATAACTTCATGACCTTTCCCACTGGCTACATCTTTGACC
GCTTCAAGACTACTGTGGCCCGCCTGATAGCCATATTTTTCTACACCTGCGCCACGATCATCATTGCCTT
CACCTCTGCAAACACTGCCATGCTGCTCTTCCTAGCCATGCCCATGCTCGCAGTGGGAGGAATCCTGTTC
CTTATCACCAACCTACAGATTGGGAACCTCTTTGGGAAACACCGTTCAACCATCATCACCCTCTACAATG
GAGCATTTGACTCCTCCTCAGCAGTGTTCCTCGTCATTAAGCTGCTTTACGAGCAGGGCATCAGCCTCAG
GTCTTCCTTCATCTTCATGTCTGTCTGCAGTGTCTGGCACATTGCGCGTACTTTCCTTCTGATGCCCAAG
GGACATATCCCCTACCCACTGCCTCCCAACTACAGCTATGGCTTGTGCTCCAGGTTTGGTGCTAGCAAGA
AAGAGAATAAAGCAGCTGAACACGAAACCAAGGAGCTGCGGTCAAAGGAATGTCTGCCACCCAAGGAAGA
GAACTCTGGACCAGAACAGCAGCAGCAGCAGGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGCAACAC
GAGCAACACTCTTTTCGACGCTGCGCGCTCTCTCGTCGATTCATCTTGCACGTGGTGTGGCTGTCTATCA
TACAGTTGTGGCATTACCTCTTCATTGGTACTCTCAACTCTCTACTCACCAAGTTATCCGGTGGGGACAA
AGTGGAAGTCAGTGCCTACACAAATGCCTTTGCCATCACCCAGTTCTTTGGCGTGCTGTGTGCCCCCTGG
AATGGCTTACTCATGGACCGCCTTAAACAGAAGTATCAGAAGGCAGCCAAAAGGACAGGTTCCTCGTCTG
AGGCTGTGGCTCTCTGCTCCATGGTGCCTTCACTGGCTCTGACGTCTCTGCTGTCCCTGGGCTTTGCCCT
GTGTGCCTCCATTCCTGTCATGCAGCTACAGTACGCCACCTTCATCCTGCAAGTGGTCAGCCGCTCCTTC
CTGTATGGATGCAATGCTGCCTTCCTCACGCTGGCATTTCCCTCAGAGCATTTTGGAAAGCTCTTTGGGC
TGGTGATGGCCTTGTCAGCTATTGTGTCTCTGCTACAGTTCCCCCTGTTCAAAGTCTCCCCTGAGAGCAA
CGCTGTGTATGTATCGATGGGGCTTGCCATTTTCCTGACATTGGTCCATCCCTTCCTGGTGTACCGTGAG
TGCCGTGCTGAGAAGACAAAATCGTCTGTGGATGCCTAG

Translation (502 aa):
MASKGLPLYLATLLTGLLECIGFAGVLFGWTSLLFVFKAENYFSEPCEQDCLLQSNVTGPSDLKAQDEKF
SLIFTLASFMNNFMTFPTGYIFDRFKTTVARLIAIFFYTCATIIIAFTSANTAMLLFLAMPMLAVGGILF
LITNLQIGNLFGKHRSTIITLYNGAFDSSSAVFLVIKLLYEQGISLRSSFIFMSVCSVWHIARTFLLMPK
GHIPYPLPPNYSYGLCSRFGASKKENKAAEHETKELRSKECLPPKEENSGPEQQQQQEQQQQQQQQQEQH
EQHSFRRCALSRRFILHVVWLSIIQLWHYLFIGTLNSLLTKLSGGDKVEVSAYTNAFAITQFFGVLCAPW
NGLLMDRLKQKYQKAAKRTGSSSEAVALCSMVPSLALTSLLSLGFALCASIPVMQLQYATFILQVVSRSF
LYGCNAAFLTLAFPSEHFGKLFGLVMALSAIVSLLQFPLFKVSPESNAVYVSMGLAIFLTLVHPFLVYRE
CRAEKTKSSVDA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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