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Report for CCDS38105.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38105.1 Public Mus musculus 2 St6galnac6 23 108 98 CCDS HistoryNCBI Gene:50935Re-query CCDS DB by CCDS ID:38105.1Re-query CCDS DB by GeneID:50935See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38105.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095045.8 ENSMUSP00000092655.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095045.8Link to Ensembl Protein Viewer:ENSMUSP00000092655.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000095045Re-query CCDS DB by Protein ID:ENSMUSP00000092655
Original member Current member EBI ENSMUST00000113290.7 ENSMUSP00000108915.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113290.7Link to Ensembl Protein Viewer:ENSMUSP00000108915.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113290Re-query CCDS DB by Protein ID:ENSMUSP00000108915
Original member Current member NCBI NM_001025310.2 NP_001020481.1 Accepted alive Link to Nucleotide Sequence:NM_001025310.2Link to Protein Sequence:NP_001020481.1Re-query CCDS DB by Nucleotide ID:NM_001025310Re-query CCDS DB by Protein ID:NP_001020481Link to BLAST:NP_001020481.1
Original member Current member NCBI NM_001289549.1 NP_001276478.1 Accepted alive Link to Nucleotide Sequence:NM_001289549.1Link to Protein Sequence:NP_001276478.1Re-query CCDS DB by Nucleotide ID:NM_001289549Re-query CCDS DB by Protein ID:NP_001276478Link to BLAST:NP_001276478.1

Chromosomal Locations for CCDS 38105.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 32609302 32609316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32612224 32612403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32614781 32615187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32618497 32618604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32619340 32619529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (900 nt):
ATGAGTAGCAACAAAGAGCAGCGGTCAGCAGTGTTTGTGATCCTCTTTGCCCTCATCACCATCCTCATCC
TCTACAGCTCCAACAGTGCCAACGAGGTCTTCCACTACGGCTCCCTGCGGGGCCGCACGCGTCGGCCAGT
CAACCTCAAGAAGTGGAGTTTCTCCAGCGCCTACTTCCCTATCCTCGGCAACAAGACGCTGCCGTCCAGG
TGCAACCAGTGTGTGATCATCACCAGCTCCAGCCACCTGCTGGGCACCAAACTGGGCCCTGAGATTGAGC
GGGCTGAGTGCACCATCCGCATGAACGATGCTCCCACCTCTGGCTACTCGGCTGACGTCGGAAACAAAAC
CACCTTCCGCGTAGTGGCCCATTCCAGTGTATTCCGTGTGCTGCGGAAGCCCCAGGAATTTGTCAACCGG
ACCCCTGAGACGGTGTTCATCTTCTGGGGACCCCCAAACAAGATGCAGAAGCCCCAGGGCAGCCTCCTGC
GCGTCATCCAGCGGGCGGGCCTCATGTTCCCGAACATGGAGGCCTATGCCGTCTCTCCCGCCCGCATGCA
GCAGTTTGACGACCTCTTCCGGGGTGAGACGGGCAAGGACAGGGAAAAGTCCCATTCCTGGTTGAGCACG
GGCTGGTTTACCATGGTGATTGCGGTGGAATTGTGTGACCATGTGCACGTGTATGGCATGGTCCCTCCTG
ACTACTGCAGCCAGCGGCCCCGCCTGCAGCGCATGCCATACCACTACTATGAACCCAAGGGGCCGGACGA
GTGTGTCACCTACATCCAGAACGAGCACAGCCGTAAGGGCAATCACCACCGCTTCATCACCGAGAAGAGG
GTCTTCTCGTCCTGGGCCCAACTCTACGGTATCACCTTCTCCCACCCCTCCTGGACCTAG

Translation (299 aa):
MSSNKEQRSAVFVILFALITILILYSSNSANEVFHYGSLRGRTRRPVNLKKWSFSSAYFPILGNKTLPSR
CNQCVIITSSSHLLGTKLGPEIERAECTIRMNDAPTSGYSADVGNKTTFRVVAHSSVFRVLRKPQEFVNR
TPETVFIFWGPPNKMQKPQGSLLRVIQRAGLMFPNMEAYAVSPARMQQFDDLFRGETGKDREKSHSWLST
GWFTMVIAVELCDHVHVYGMVPPDYCSQRPRLQRMPYHYYEPKGPDECVTYIQNEHSRKGNHHRFITEKR
VFSSWAQLYGITFSHPSWT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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