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Report for CCDS37954.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37954.1 Public Mus musculus 19 Ranbp6 23 108 98 CCDS HistoryNCBI Gene:240614Re-query CCDS DB by CCDS ID:37954.1Re-query CCDS DB by GeneID:240614See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37954.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099525.4 ENSMUSP00000100503.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099525.4Link to Ensembl Protein Viewer:ENSMUSP00000100503.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000099525Re-query CCDS DB by Protein ID:ENSMUSP00000100503
Original member Current member NCBI NM_177721.4 NP_808389.2 Accepted alive Link to Nucleotide Sequence:NM_177721.4Link to Protein Sequence:NP_808389.2Re-query CCDS DB by Nucleotide ID:NM_177721Re-query CCDS DB by Protein ID:NP_808389Link to BLAST:NP_808389.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808389.2 1105 Q8BIV3 1105 100% 0 0

Chromosomal Locations for CCDS 37954.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 29809633 29812950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3318 nt):
ATGGCGGCGGCCGGGTCTGCAGGGTTGCCGGCGACCGTGTCGGAAAAGCAGGAGTTTTACCAGCTTCTGA
AGAACCTGATCAATCCAAGCTGCATGGTGCGGAGGCAAGCCGAGGAGGTCTATGAGAATATCCCAGGTCT
GTGTAAGACTACATTTCTCTTAGACGCCGTCCGAAATAGAAGAGCAGGTTATGAGGTGAGACAAATGGCT
GCCGCACTGCTACGACGGCTTTTGTCCTCAGGGTTTGAGGAGGTCTATCCAAATCTACCTCCTGAAGTGC
AGAGGGATGTCAAGATTGAACTGATACTGGCCGTTAAGTTAGAAACACATGCTAGCATGAGGAAAAAGCT
TTGTGATATTTTTGCGGTGCTGGCCAGGAATTTGATAGATGAGAGTGGCACTAACCATTGGCCAGAAGGT
CTGAAATTCCTCATTGATTCGATTCACTCTAAAAATGTGGTTCTGTGGGAAGTTGCACTTCACGTTTTCT
GGCACTTTCCTGGGATTTTTGGGAACCAGGATCGTCACGATTTGGATATCATCAAGAGGTTGTTGGACCA
GTGTATTCAAGATCAGGAGCATCCAGCAATCAGGACATTATCTGCTAGAGCTGCAGCTACGTTCGTCCTT
GCTAATGAAAACAATATTGCTCTTTTCAAAGACTTTGCGGATTTGCTTCCTGGGATCTTACAGGCTGTGA
ATGATTCCTGCTACCAGGATGATGATTCTGTGCTAGAATCCCTTGTTGAGATTGCAGATACTGTACCTAA
GTACTTGGGTCCCTATCTAGAAGATACTCTGCAGTTGAGCCTGAAGTTGTGTGGAGACTCTAGGCTTAGT
AACCTGCAACGCCAGCTGGCTCTGGAAGTAATAGTCACCTTATCTGAAACTGCAACTCCAATGTTGAAAA
AGCATACGAATATTATTGCACAGGCTGTGCCTCATATATTAGCAATGATGGTTGATCTTCAAGATGATGA
TGACTGGGTAAATGCTGATGAAATGGAAGAAGATGACTTTGACAGCAATGCGGTTGCTGCTGAGAGTGCC
CTAGACAGACTGGCTTGTGGACTTGGTGGGAAAGTTGTTTTGCCAATGACCAAGGAGCATATCATGCAGA
TGCTTCAGAGCCCTGACTGGAAATGTCGACACGCCGGATTAATGGCCTTATCAGCCATTGGAGAAGGTTG
CCATCAGCAAATGGAACCAATTCTAGATGAAACAGTTAACTCGGTTTTACTTTTTCTTCAGGATCCTCAT
CCAAGGGTAAGGGCTGCTGCCTGTACTACACTTGGACAGATGGCTACAGATTTTGCACCTAGTTTCCAAA
AGAAATTCCATGAGATAGTGATTACAGCTTTGTTGCGAACCATGGAAAACCAAGGTAATCAACGTGTGCA
ATCTCACGCAGCTTCTGCTCTTGTTATTTTTATTGAAGACTGCCCCAAGTCATTGCTAATTCTATATTTG
GAAAATATGGTAAAAAGTCTCCATTCCATCTTGGTAATTAAACTTCAAGAGCTGATTCGGAATGGAACTA
AGTTGGCCTTAGAACAACTTGTGACAACCATTGCTTCCGTTGCAGATGCAATAGAAGAAAGCTTTATTCC
ATATTATGATATATTTATGCCCTCACTCAAACACGTTGTTGAGCTCGCTGTTCAAAAGGAACTCAAGCTT
CTTCGAGGAAAAACTATTGAATGCATTAGCCATGTTGGACTTGCCGTTGGGAAGGAAAAATTTATGCAAG
ATGCATCAAATGTGATGCAGTTACTGTTGAAAACACAATCAGACTTAAATAACATGGAAGATGATGACCC
TCAGACTTCTTACATGGTTTCAGCCTGGGCTAGAATGTGTAAAATCCTTGGCAAAGACTTTGAGCAATAT
CTCCCACTGGTTATTGAGCCACTTATCAAGACTGCTTCAGCTAAGCCTGATGTCGCTCTCTTAGACACAC
AGGATGTGGAGAACATGAGTGACGACGATGGCTGGCAGTTTGTAAACCTCGGAGACCAGCAAAGCTTTGG
CATCAAAACTTCAGGACTTGAAGCAAAAGCAACTGCTTGCCAGATGTTGGTTTACTATGCGAAGGAGTTA
AGAGAAGGATTTGTGGAATACACGGAACAAGTTGTGAAGATGATGGTTCCTCTGCTGAAATTTTATTTTC
ATGACAATGTTCGAGTGGCAGCTGCGGAAGCCATGCCCTTTCTCTTGGAATGTGCAAGAATTCGTGGCTC
AGAGTATCTTTCACAGATGTGGCAGTTTATATGTGATCCCTTAATCAAGGCAATTGGAACTGAACCTGAT
ACAGATGTACTCTCAGAAATAATGAATTCTTTTGCCAAGTCCATTGAGGTCATGGGAGATGGTTGCCTCA
ACGATGAACACTTGGAAGAACTGGGAGGAATTTTGAAGGCAAAACTTGAAGGGCACTTTAAAAACCAAGA
GTTACGGCAAGTAAAAAGGCAAGAAGAAAATTATGACCAACAGGTTGAAATGTCTCTTCAAGATGAGGAT
GAATGTGATGTTTATATTCTGACCAAAGTATCAGATATTTTGCACTCATTATTTAGTACTTACAAGGAAA
AAATTTTGCCATGGTTTGAGCAGCTACTCCCACTAATTGTAAATCTAATTTGTTCAAGTAGGCCATGGCC
AGACAGACAATGGGGACTATGCATATTTGATGACATCATAGAGCATTGCAGTCCAACCTCATTCAAGTAT
GTTGAGTATTTCCGGTGGCCGATGCTTCTCAATATGCGAGACAACAACCCTGAAGTCAGACAAGCTGCTG
CTTATGGACTGGGAGTCATGGCACAGTTTGGTGGAGATGACTACCGTTCCTTGTGTTCAGAAGCCGTTCC
ACTCTTGGTAAAAGTTATTAAGTGTGCAAATTCCAAAACCAAAAAGAATGTGATTGCTACAGAGAACTGT
ATCTCAGCAATCGGAAAGATTCTGAAGTTTAAGCCCAACTGTGTAAATGTGGATGAAGTTCTCCCACACT
GGTTATCGTGGCTTCCGCTGCATGAAGATAAAGAAGAAGCTATTCAGACTTTGAATTTTCTCTGTGACCT
AATTGAAAGCAACCACCCAGTTGTGATTGGTCCAAATAATTCCAATCTTCCCAAAATCATCAGTATAATC
GCAGAAGGAAAAATTAATGAAACTATTAGCCATGAAGACCCCTGTGCCAAACGCCTAGCTAATGTTGTCC
GTCAGATACAGACTTCTGAAGAATTGTGGTTGGAATGCACATCTCAACTCGATGATGAGCAGCAGGAAGC
TTTACATGAGTTACTCAGTTTTGCTTGA

Translation (1105 aa):
MAAAGSAGLPATVSEKQEFYQLLKNLINPSCMVRRQAEEVYENIPGLCKTTFLLDAVRNRRAGYEVRQMA
AALLRRLLSSGFEEVYPNLPPEVQRDVKIELILAVKLETHASMRKKLCDIFAVLARNLIDESGTNHWPEG
LKFLIDSIHSKNVVLWEVALHVFWHFPGIFGNQDRHDLDIIKRLLDQCIQDQEHPAIRTLSARAAATFVL
ANENNIALFKDFADLLPGILQAVNDSCYQDDDSVLESLVEIADTVPKYLGPYLEDTLQLSLKLCGDSRLS
NLQRQLALEVIVTLSETATPMLKKHTNIIAQAVPHILAMMVDLQDDDDWVNADEMEEDDFDSNAVAAESA
LDRLACGLGGKVVLPMTKEHIMQMLQSPDWKCRHAGLMALSAIGEGCHQQMEPILDETVNSVLLFLQDPH
PRVRAAACTTLGQMATDFAPSFQKKFHEIVITALLRTMENQGNQRVQSHAASALVIFIEDCPKSLLILYL
ENMVKSLHSILVIKLQELIRNGTKLALEQLVTTIASVADAIEESFIPYYDIFMPSLKHVVELAVQKELKL
LRGKTIECISHVGLAVGKEKFMQDASNVMQLLLKTQSDLNNMEDDDPQTSYMVSAWARMCKILGKDFEQY
LPLVIEPLIKTASAKPDVALLDTQDVENMSDDDGWQFVNLGDQQSFGIKTSGLEAKATACQMLVYYAKEL
REGFVEYTEQVVKMMVPLLKFYFHDNVRVAAAEAMPFLLECARIRGSEYLSQMWQFICDPLIKAIGTEPD
TDVLSEIMNSFAKSIEVMGDGCLNDEHLEELGGILKAKLEGHFKNQELRQVKRQEENYDQQVEMSLQDED
ECDVYILTKVSDILHSLFSTYKEKILPWFEQLLPLIVNLICSSRPWPDRQWGLCIFDDIIEHCSPTSFKY
VEYFRWPMLLNMRDNNPEVRQAAAYGLGVMAQFGGDDYRSLCSEAVPLLVKVIKCANSKTKKNVIATENC
ISAIGKILKFKPNCVNVDEVLPHWLSWLPLHEDKEEAIQTLNFLCDLIESNHPVVIGPNNSNLPKIISII
AEGKINETISHEDPCAKRLANVVRQIQTSEELWLECTSQLDDEQQEALHELLSFA


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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