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Report for CCDS37864.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37864.1 Public Mus musculus 18 Hdhd2 23 108 98 CCDS HistoryNCBI Gene:76987Re-query CCDS DB by CCDS ID:37864.1Re-query CCDS DB by GeneID:76987See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37864.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097521.11 ENSMUSP00000095128.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097521.11Link to Ensembl Protein Viewer:ENSMUSP00000095128.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000097521Re-query CCDS DB by Protein ID:ENSMUSP00000095128
Original member Current member NCBI NM_001039202.1 NP_001034291.1 Accepted alive Link to Nucleotide Sequence:NM_001039202.1Link to Protein Sequence:NP_001034291.1Re-query CCDS DB by Nucleotide ID:NM_001039202Re-query CCDS DB by Protein ID:NP_001034291Link to BLAST:NP_001034291.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034291.1 146 Q3UGR5-2 146 100% 0 0

Chromosomal Locations for CCDS 37864.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 76951123 76951223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 76954978 76955186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 76956839 76956923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 76960814 76960859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (441 nt):
ATGGCAGCGCGCCGTGCGTTAAAAGCTGTTTTGGTGGATCTCAATGGCACACTTCACATTGAAGATGCAG
CTGTGCCAGGCGCACAGGAAGCTCTTAAAAGGTTGCGTGCCACTTCTGTGATGGTTCGGTTTGTGACCAA
TACAACCAAAGAGAGCAAGAAAGACCTACTGGAGAGACTGAAAAAACTGGAGTTTGAGATCTCCGAAGAT
GAAATATTTACTTCCCTGACAGCAGCCCGAAACTTAATCGAGCAGAAGCAAGTCAGGCCCATGCTCCTGG
TTGATGACCGCGCACTGCCTGAGTTCACAGGAGTTCAAACCCAGGACCCCAACGCTGTGGTCATTGGACT
GGCACCAGAGCATTTTCATTATCAGCTTCTGAACCAAGCATTCCGGAGAAAACAACGGGGACAAGAGGAG
GAGAACAGTGACAGCCACTGA

Translation (146 aa):
MAARRALKAVLVDLNGTLHIEDAAVPGAQEALKRLRATSVMVRFVTNTTKESKKDLLERLKKLEFEISED
EIFTSLTAARNLIEQKQVRPMLLVDDRALPEFTGVQTQDPNAVVIGLAPEHFHYQLLNQAFRRKQRGQEE
ENSDSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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