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Report for CCDS37863.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37863.1 Public Mus musculus 18 Hdhd2 23 108 98 CCDS HistoryNCBI Gene:76987Re-query CCDS DB by CCDS ID:37863.1Re-query CCDS DB by GeneID:76987See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37863.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026485.14 ENSMUSP00000026485.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026485.14Link to Ensembl Protein Viewer:ENSMUSP00000026485.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000026485Re-query CCDS DB by Protein ID:ENSMUSP00000026485
Original member Current member EBI ENSMUST00000097522.10 ENSMUSP00000095129.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097522.10Link to Ensembl Protein Viewer:ENSMUSP00000095129.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000097522Re-query CCDS DB by Protein ID:ENSMUSP00000095129
Original member Current member EBI ENSMUST00000150990.8 ENSMUSP00000114212.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000150990.8Link to Ensembl Protein Viewer:ENSMUSP00000114212.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000150990Re-query CCDS DB by Protein ID:ENSMUSP00000114212
Original member Current member EBI ENSMUST00000148955.2 ENSMUSP00000116243.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000148955.2Link to Ensembl Protein Viewer:ENSMUSP00000116243.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000148955Re-query CCDS DB by Protein ID:ENSMUSP00000116243
Original member Current member EBI ENSMUST00000145634.8 ENSMUSP00000123320.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000145634.8Link to Ensembl Protein Viewer:ENSMUSP00000123320.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000145634Re-query CCDS DB by Protein ID:ENSMUSP00000123320
Original member Current member NCBI NM_001039201.2 NP_001034290.1 Accepted alive Link to Nucleotide Sequence:NM_001039201.2Link to Protein Sequence:NP_001034290.1Re-query CCDS DB by Nucleotide ID:NM_001039201Re-query CCDS DB by Protein ID:NP_001034290Link to BLAST:NP_001034290.1
Original member Current member NCBI NM_001361227.1 NP_001348156.1 Accepted alive Link to Nucleotide Sequence:NM_001361227.1Link to Protein Sequence:NP_001348156.1Re-query CCDS DB by Nucleotide ID:NM_001361227Re-query CCDS DB by Protein ID:NP_001348156Link to BLAST:NP_001348156.1
Original member Current member NCBI NM_029826.2 NP_084102.1 Accepted alive Link to Nucleotide Sequence:NM_029826.2Link to Protein Sequence:NP_084102.1Re-query CCDS DB by Nucleotide ID:NM_029826Re-query CCDS DB by Protein ID:NP_084102Link to BLAST:NP_084102.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034290.1 259 Q3UGR5-1 259 100% 0 0
NP_001348156.1 259 Q3UGR5-1 259 100% 0 0
NP_084102.1 259 Q3UGR5-1 259 100% 0 0

Chromosomal Locations for CCDS 37863.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 76951123 76951223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 76954978 76955186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 76956839 76956923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 76965051 76965267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 76967144 76967207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 76970611 76970714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (780 nt):
ATGGCAGCGCGCCGTGCGTTAAAAGCTGTTTTGGTGGATCTCAATGGCACACTTCACATTGAAGATGCAG
CTGTGCCAGGCGCACAGGAAGCTCTTAAAAGGTTGCGTGCCACTTCTGTGATGGTTCGGTTTGTGACCAA
TACAACCAAAGAGAGCAAGAAAGACCTACTGGAGAGACTGAAAAAACTGGAGTTTGAGATCTCCGAAGAT
GAAATATTTACTTCCCTGACAGCAGCCCGAAACTTAATCGAGCAGAAGCAAGTCAGGCCCATGCTCCTGG
TTGATGACCGCGCACTGCCTGAGTTCACAGGAGTTCAAACCCAGGACCCCAACGCTGTGGTCATTGGACT
GGCACCAGAGCATTTTCATTATCAGCTTCTGAACCAAGCATTCCGGCTACTCCTGGATGGAGCCCCTCTG
ATAGCTATCCACAAGGCCAGGTACTACAAGAGAAAAGATGGCTTAGCCTTGGGACCAGGACCATTTGTGA
CTGCCTTAGAGTATGCCACAGACACGAAAGCCATGGTGGTGGGGAAACCAGAGAAGACATTCTTTCTGGA
AGCCTTGAGGGATGCTGACTGTGCACCGGAGGAGGCCGTCATGATAGGAGACGATTGCAGGGATGATGTC
GATGGGGCTCAGAACATTGGCATGCTGGGCATCTTAGTTAAAACCGGGAAATACAAAGCAGCAGATGAAG
AAAAAATTAATCCACCTCCCTACTTAACTTGCGAGAGCTTCCCTCACGCTGTGGACCACATTCTGCAGCA
CCTCCTGTGA

Translation (259 aa):
MAARRALKAVLVDLNGTLHIEDAAVPGAQEALKRLRATSVMVRFVTNTTKESKKDLLERLKKLEFEISED
EIFTSLTAARNLIEQKQVRPMLLVDDRALPEFTGVQTQDPNAVVIGLAPEHFHYQLLNQAFRLLLDGAPL
IAIHKARYYKRKDGLALGPGPFVTALEYATDTKAMVVGKPEKTFFLEALRDADCAPEEAVMIGDDCRDDV
DGAQNIGMLGILVKTGKYKAADEEKINPPPYLTCESFPHAVDHILQHLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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