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Report for CCDS37784.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37784.1 Public Mus musculus 18 Pcdhga11 23 108 98 CCDS HistoryNCBI Gene:93723Re-query CCDS DB by CCDS ID:37784.1Re-query CCDS DB by GeneID:93723See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 37784.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061279.9 ENSMUSP00000058362.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061279.9Link to Ensembl Protein Viewer:ENSMUSP00000058362.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000061279Re-query CCDS DB by Protein ID:ENSMUSP00000058362
Original member Current member NCBI NM_033594.2 NP_291072.1 Accepted alive Link to Nucleotide Sequence:NM_033594.2Link to Protein Sequence:NP_291072.1Re-query CCDS DB by Nucleotide ID:NM_033594Re-query CCDS DB by Protein ID:NP_291072Link to BLAST:NP_291072.1

Chromosomal Locations for CCDS 37784.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 37755941 37758367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37825021 37825079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37833265 37833353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37839903 37840129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2802 nt):
ATGGCGAATCAGTCTCAGCGCCTGGACCGCCGCGCGCTGATCCCGCTGTGCATTTTCCTGGGGACCTTGC
TGACCTTTGGGACAGGACAGATCCGATACTCGGTTCCAGAAGAAACAGATAAAGGCTTCTTCGTAGGCAA
CATCTCCAAAGACCTGGGGCTGGAGCCCTGGGAGGTCGCGGAACGCGGAGTCCGCATCATCTCCAGGGGA
CAATCGCAGCTTTTCTCTCTGAATCCGCGAGGCGGCAGCTTGGTCACTGCAGGTAGGATCGACCGTGAAG
AGCTATGTGATACGATGCCCTCCTGCATGCTGAATTTGGAAATTCTCGTGGAGGAAACCCTGAAGATTTA
CGGAGTTGAGGTGGAAGTACTGGACATTAACGATAACGCTCCCAGCTTCCGGGAAGAGGAAGTAGAGATC
AAAGTCAGCGAGCATACCAGTCCTGGGTCGCGATTTCCTCTTCCTAGCGCTAGGGATCCAGACGCAGGGA
TGAACTCCCTCCAGAGCTACCAGCTCAGCCCAAGCAGTTATTTCTCCTTGCAGGTGAGAGGCGGGACTGA
TGGGGACAAGAATCCAGAGCTAGTGCTGGAGGAAGGTCTGGACCGGGAGAAAGAGGCATCTCACCACCTC
CTCCTCACAGCCTTAGATGGGGGAGATCCCGTCCGCAAGGGCACGGTTCCCATTCGCGTGGTGGTCCTCG
ACGTCAATGATCACATCCCAAAATTTACACAGCCTGTGTATAGAGTGAGTATTCCTGAAAACCTCAGCTC
CGGGACGCGGGTGCTCGTGGTAAATGCCTCAGACCCAGATGAGGGGATCAACGGGGAAGTGATATACTCT
TTCCGGAAAATGAAAAGCAAAGCTTCTGAAATATTTCAACTGAATTCTCAAACTGGGGAGGTTCTAGTTG
GAAAGCCTCTGGATTTTGAAAAATACAGATTCTATGAGATGGAAATTCAAGGCCAGGATGGTGGAGGGCT
GCTTAGCACCACTACGTTGTTGATCACGGTTGAAGATGTGAATGATAACGCTCCAGAGATAACTGTCACC
TCTGCCAGTAACTCAGTGCCGGAAAATTCTCCTTCGGGCACAGTAATTGCTCTTCTAAACGTTCAAGATC
AAGATTCTGGAGAAAATGGTCAGGTCTCTTGCTTCATTCCTAGTGGTCTTCCTTTTAAGTTAGAAAAGAC
GTATGGAAATTATTATAAATTGATAACAAATAGTGAACTGGACCGGGAGCAGGTGGAGAGCTACAATATT
ACATTGATCGCCAAAGATCAGGGCAGTCCACCGTTGTCTACAGAAACTCACCTACTGCTCAAAGTGGCAG
ATGCCAACGACAACCCTCCAGTTTTCTCTAGCTCCTCTTACTTGGCCTACATTCCTGAAAACAACCCCAG
AGGCTCTTCTATCTTCTCGGTGACCGCCATTGATAGGGATAGCAGAGAAAATGCCCAGGTCACTTACTCT
CTGGCTGAGTACACCATCCAGGGAACACCTCTGTCCTCTTACGTTTCTATCAATTCAGACACGGGTGTGC
TGTATGCCCTGCAATCCTTCGACTATGAGCAATTCCAGACCTTACAACTGGGAGTGACCGCTAGTGATAA
TGGCGACCCACCATTAAGCAGCAATATTTCGCTGACCCTTTTCGTGCTGGACCAGAATGACAACACTCCA
GAGATTTTATACCCCTCTCTCCCTACCGATGGTTCCACTGGTGTGGAATTAGCACCTCGCTCCGCAGAGC
CGGGTTATTTAGTGACCAAGGTGGTGGCTGTGGACAGAGACTCCGGGCAGAACGCCTGGCTGTCCTATCG
CCTGCTCAAAGCCAGCGAGCCAGGACTCTTCTCCGTGGGGCTGCACACGGGGGAGGTACGCACGGCCCGA
GCCATGATGGACAAAGATGCTCTCAAACAGAGTCTCGTGGTAACTGTGCAAGACCACGGCCAGCCTCCTC
TCTCCGCCACTGTCAAGCTCACAGTGGCGGTGGCTGACAGCATTCCAGAGGTTCTGGAGGACTTGGTTAG
TCTGGAGTCTCCCGCCAACCCGGATGAGTCAGGCCTCACCCTCTACCTAGTGGTGGCCATCACTGCAGTC
TCCTGCATCTTCCTCATCTTTGTCATGGTACTGCTGGCTCTCAAGCTTAGGCGCTGGCACTCATTACGTC
TGCTCCAGGCTGCCAGCGGATTGGCTGGTGTGCCTCCTTCGCACTTTGTGGGCGTGGACGGGATGCGCGC
TTTCCTCCAGACGTATTCCCACGAAGTTTCGCTCACTGCAGACTCAAGGAAGAGTCACCTCATCTTCCCG
CAGCCCAACTATGCAGACACACTCATCAGCCAGGAGAGCTGTGGGAAAAGCGAGCCTCTCCTGATAACTG
AAGACTCAACTACAGTTTTAGGCAAATGTGAACCGACAGATATTCAGCAAGCCCCGCCCAACACTGACTG
GCGTTTCTCTCAAGCCCAGAGACCCGGCACGAGCGGATCCCAAAATGGTGATGAAACTGGCACCTGGCCC
AACAACCAGTTTGATACAGAGATGCTGCAAGCCATGATCTTGGCCTCTGCCAGCGAAGCTGCTGATGGGA
GCTCTACCCTGGGAGGGGGCGCTGGCACCATGGGTCTGAGCGCTCGATACGGACCCCAGTTTACCCTGCA
GCACGTGCCTGACTACCGCCAGAACGTGTACATCCCTGGCAGCAATGCCACGCTGACCAATGCCGCTGGC
AAACGAGATGGCAAGGCTCCAGCAGGTGGTAATGGCAACAAGAAGAAATCGGGCAAGAAAGAGAAGAAGT
AA

Translation (933 aa):
MANQSQRLDRRALIPLCIFLGTLLTFGTGQIRYSVPEETDKGFFVGNISKDLGLEPWEVAERGVRIISRG
QSQLFSLNPRGGSLVTAGRIDREELCDTMPSCMLNLEILVEETLKIYGVEVEVLDINDNAPSFREEEVEI
KVSEHTSPGSRFPLPSARDPDAGMNSLQSYQLSPSSYFSLQVRGGTDGDKNPELVLEEGLDREKEASHHL
LLTALDGGDPVRKGTVPIRVVVLDVNDHIPKFTQPVYRVSIPENLSSGTRVLVVNASDPDEGINGEVIYS
FRKMKSKASEIFQLNSQTGEVLVGKPLDFEKYRFYEMEIQGQDGGGLLSTTTLLITVEDVNDNAPEITVT
SASNSVPENSPSGTVIALLNVQDQDSGENGQVSCFIPSGLPFKLEKTYGNYYKLITNSELDREQVESYNI
TLIAKDQGSPPLSTETHLLLKVADANDNPPVFSSSSYLAYIPENNPRGSSIFSVTAIDRDSRENAQVTYS
LAEYTIQGTPLSSYVSINSDTGVLYALQSFDYEQFQTLQLGVTASDNGDPPLSSNISLTLFVLDQNDNTP
EILYPSLPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTGEVRTAR
AMMDKDALKQSLVVTVQDHGQPPLSATVKLTVAVADSIPEVLEDLVSLESPANPDESGLTLYLVVAITAV
SCIFLIFVMVLLALKLRRWHSLRLLQAASGLAGVPPSHFVGVDGMRAFLQTYSHEVSLTADSRKSHLIFP
QPNYADTLISQESCGKSEPLLITEDSTTVLGKCEPTDIQQAPPNTDWRFSQAQRPGTSGSQNGDETGTWP
NNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAG
KRDGKAPAGGNGNKKKSGKKEKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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