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Report for CCDS37780.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37780.1 Public Mus musculus 18 Pcdhb9 23 108 98 CCDS HistoryNCBI Gene:93880Re-query CCDS DB by CCDS ID:37780.1Re-query CCDS DB by GeneID:93880See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37780.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057228.1 ENSMUSP00000058801.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057228.1Link to Ensembl Protein Viewer:ENSMUSP00000058801.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000057228Re-query CCDS DB by Protein ID:ENSMUSP00000058801
Original member Current member NCBI NM_053134.3 NP_444364.3 Accepted alive Link to Nucleotide Sequence:NM_053134.3Link to Protein Sequence:NP_444364.3Re-query CCDS DB by Nucleotide ID:NM_053134Re-query CCDS DB by Protein ID:NP_444364Link to BLAST:NP_444364.3

Chromosomal Locations for CCDS 37780.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 37400955 37403441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2487 nt):
ATGAGCAACACGGTGAAGATTCCTCCAAAGAGGGAATCAGAATTCAGTGTTTCAAAACATTTGGAGACTG
CTACAGGATTGGATGCAAGCATGCATTTCCTCATCATGGAGAAGCTGGGGAGAATTCACCTAAACAGGCA
AGTAATGGCATTTATTTTTATGATGGTTTTGGTTCAGGTTTGCAGTGAGCCAACAATTCGATACTCTATC
TTAGAGGAAACAGAAAGTGGCTCCTTTGTAGCCCACCTGGCCAAGGATCTGGGTCTGGGAGCTAGGGAGC
TGGCTGCCAGGTCTGCACGGGTGTTGTCTGATGATTACAAGCAGAGATTACTGCTGGATCCTGAGACTGG
AGATTTGCTTCTGAGGGAGAAAGTAGACCGGGAGGAGGTGTGTAGCACTGTGGATCCCTGTGTGCTGCAT
TTCCAGGTGACTCTTGAAAAGCCAGTGCAATATTTTCAAAGAGAATTATTGATCCAGGACATAAATGATC
ATGCTCCAGAATTCCCAGATAGAGAACTGCTCTTGAGAATACCAGAGAACAGCCAGCAAGGCACACAATT
TTCACTGAATTTAGCCCAGGACTTGGATGTGGGCAGCAATGGGCTTCAACAATACACAGTCAGCCCCAAC
CCTTATTTTCACGTCCTCACTCAAAATAATAGTAAAGGCAAAAAATACCCAGAGTTGGTGCAGGACAGAG
GCCTGGACAGAGAGGAGCAGGCAGAGCTGAGCTTAACCCTCACAGCTCTGGATGGCGGGTCTCCACCGAG
GTCAGGAACAGCCCTGGTTCGAATCCTGATCATGGATATCAATGACAATGCTCCTGAGTTTGTGAACAGT
CCCTATGAGGTGCAGGTCCTAGAGAGCAGTCCTCCAGACTCCCCAGTCTTGACTGTCTTAGCACGGGATG
CAGATGCTGGCAACTTTGGGAGAGTTTCCTATGGCTTCTTTCAAGCATCAGATGAAATCCAACAAACATT
CTCAATAAACGCAACTAGTGGAGACATGCGATTGAAAAAGAAATTGGATTTTGAAAAAATTAAATCTTAC
CATGTGGAAATCGAGGCCATAGATGGAGGTGGGCTTTCTGGGAAAGGCTCTGTAACGATAGAGGTGGTGG
ATGTGAATGACAATGCCCCAGAGCTGACCATATCTTCACTGACCAGCTCTGTCCCAGAAAATGCTCCTGA
GACGATCATAAGCATCTTCAGAGTTGGGGACAGGGATTCCGGAGAGAATGGAAAGATGGTTTGTTCTATT
CCAGAGAATCTGCCATTTATTCTGAAATCCACCTTCAAGAACTTCTACACCCTGGTGACAGAGAGCCCTC
TGGACAGAGAAAGCAGAGCTGAGTACAATATCACCATCATGGTCTCTGACATGGGCACACCCAGGCTCAC
AACATGGCACACCATAAAGGTGCAGGTGTCCGACATCAACGACAACACCCCCGCCTTCACCCAAACCTCC
TACACCATGTTTGTCCGCGAGAACAACAGCCCTGCCCTGCACATAGGCACCATCAGTGCCACAGACTCAG
ACTCAGGCTCCAATGCCCACATCACCTACTCGCTGCTGCCGCCCCATGATCCGGAACTGGCCCTCTCTTC
GTTAATCTCGATTAACGCTGACAATGGGCAGCTGTTTGCACTCAGGGCGCTGGACTATGAGGCCCTGCAG
GTCTTCGAGTTCCACGTGGGCGCCACAGATGGAGGCTCACCTCCACTTAGCAGCCAGGCTCTGGTGCGCG
TGGTGGTGCTGGATGACAATGACAATGCGCCCTTCGTGCTCTACCCTATGCAGAACGCCTCGGCTCCCTT
CACTGAGCTGCTGCCTAGAGCTGCGGAGCCAGGCTACCTGGTCACCAAGGTGGTTGCAGTGGACCGCGAC
TCTGGCCAGAATGCCTGGCTATCCTTCCAGTTGCTCAAGGCCACGGAACCTGGGCTGTTCAGCGTGTGGG
CGCACAATGGAGAGGTGCGCACCACCAGGTTGTTGAGTGAGCGCGATGTGCCCAAGCACAGGCTACTGCT
GGTGGTCAAGGACAATGGAGAGCCTCAGCGCTCTGCCAGTGTCACTCTGCAGGTGCTGTTAGTGGATGGC
TTCTCACAATCTTACTTACCTCTTCCAGAGGTAGCGCGGGATCCCGCCCATGAAGATGAGGACGTGCTTA
CATTGTACCTGGTCATTGCCTTGGCATCTGTGTCTTCTCTCTTCCTCCTGTCTGTGCTGCTGTTTGTGGG
GGTAAGACTGTGCAGAAGGGCCAGAGAGGTCTCTCTGGGTGGCTGCTCTATGCCTGGTGAACACTTTCCT
GGCCACCTGGTCGATGTCAGTGGAGCAGGGACCCTGTCCCAAAGCTACCAGTATGAGGTGTGTCTGAGGG
GCGACTCTGGGACTGGTGAGTTCAAGTTCCTGAAACCCATGATCCCCAATGCTGGGATAGAAATTATGGA
AAGTCCCCACTGCAGGGATAGCTTTGTATTCAACTAA

Translation (828 aa):
MSNTVKIPPKRESEFSVSKHLETATGLDASMHFLIMEKLGRIHLNRQVMAFIFMMVLVQVCSEPTIRYSI
LEETESGSFVAHLAKDLGLGARELAARSARVLSDDYKQRLLLDPETGDLLLREKVDREEVCSTVDPCVLH
FQVTLEKPVQYFQRELLIQDINDHAPEFPDRELLLRIPENSQQGTQFSLNLAQDLDVGSNGLQQYTVSPN
PYFHVLTQNNSKGKKYPELVQDRGLDREEQAELSLTLTALDGGSPPRSGTALVRILIMDINDNAPEFVNS
PYEVQVLESSPPDSPVLTVLARDADAGNFGRVSYGFFQASDEIQQTFSINATSGDMRLKKKLDFEKIKSY
HVEIEAIDGGGLSGKGSVTIEVVDVNDNAPELTISSLTSSVPENAPETIISIFRVGDRDSGENGKMVCSI
PENLPFILKSTFKNFYTLVTESPLDRESRAEYNITIMVSDMGTPRLTTWHTIKVQVSDINDNTPAFTQTS
YTMFVRENNSPALHIGTISATDSDSGSNAHITYSLLPPHDPELALSSLISINADNGQLFALRALDYEALQ
VFEFHVGATDGGSPPLSSQALVRVVVLDDNDNAPFVLYPMQNASAPFTELLPRAAEPGYLVTKVVAVDRD
SGQNAWLSFQLLKATEPGLFSVWAHNGEVRTTRLLSERDVPKHRLLLVVKDNGEPQRSASVTLQVLLVDG
FSQSYLPLPEVARDPAHEDEDVLTLYLVIALASVSSLFLLSVLLFVGVRLCRRAREVSLGGCSMPGEHFP
GHLVDVSGAGTLSQSYQYEVCLRGDSGTGEFKFLKPMIPNAGIEIMESPHCRDSFVFN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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