NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS37694.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37694.1 Public Mus musculus 17 Ltbp1 23 108 98 CCDS HistoryNCBI Gene:268977Re-query CCDS DB by CCDS ID:37694.1Re-query CCDS DB by GeneID:268977See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37694.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112516.7 ENSMUSP00000108135.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112516.7Link to Ensembl Protein Viewer:ENSMUSP00000108135.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112516Re-query CCDS DB by Protein ID:ENSMUSP00000108135
Original member Current member NCBI NM_206958.3 NP_996841.1 Accepted alive Link to Nucleotide Sequence:NM_206958.3Link to Protein Sequence:NP_996841.1Re-query CCDS DB by Nucleotide ID:NM_206958Re-query CCDS DB by Protein ID:NP_996841Link to BLAST:NP_996841.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_996841.1 1394 Q8CG19-2 1394 100% 0 0

Chromosomal Locations for CCDS 37694.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 75178982 75179204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75225156 75225380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75226967 75227241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75248894 75248996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75252344 75252415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75266488 75266610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75273867 75274034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75276396 75276623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75278952 75278974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75282328 75282427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75282920 75283018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75290015 75290140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75291291 75291416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75292756 75292878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75296224 75296343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75310156 75310278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75312976 75313098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75315003 75315125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75320971 75321093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75327197 75327322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75348744 75348869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75352687 75352830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75359290 75359469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75360712 75360798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75362510 75362638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75363338 75363478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75364339 75364509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75385073 75385195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75389430 75389579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75390372 75390553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4185 nt):
ATGGATACTAAGCTGATGTGTTTGTTGTTCTTTCTCTGTCTGCCTCTACTCCTAGTGAGTAACCACACTG
GTCGCATCAAGGTGGTCTTTACTCCGAGCATCTGTAAAGTGACCTGCACCAAGGGCAACTGTCAGAACAG
CTGCCAGAAGGGGAATACCACCACTCTCATTAGTGAGAACGGCCATGCAGCCGACACCCTGACAGCCACG
AACTTCCGAGTGGTTATTTGCCATCTTCCGTGTATGAATGGTGGCCAGTGCAGTTCAAGGGACAAATGTC
AGTGCCCTCCAAATTTCACAGGAAAGCTTTGCCAGATCCCTGTCCTTGGTGCCAGTATGCCCAAACTCTA
CCAGCACGCCCAGCAGCAGGGCAAGGCATTGGGGAGTCACGTCATCCATTCCACACATACCTTGCCTCTA
ACCATGACTAGCCAGCAAGGGGTCAAAGTGAAATTCCCCCCCAACATAGTCAATATCCATGTGAAACATC
CTCCCGAGGCTTCTGTCCAGATACACCAGGTTTCCAGGATTGACAGCCCAGGAGGCCAGAAGGTGAAGGA
AGCCCAACCAGGCCAGTCCCAAGTCTCTTACCAAGGACTTCCGGTCCAGAAGACCCAGACAGTCCATTCT
ACGTACTCCCACCAGCAGCTTATTCCCCATGTGTATCCCGTGGCTGCTAAGACACAACTTGGCCGATGCT
TCCAGGAAACCATTGGATCACAGTGTGGCAAAGCGCTCCCTGGCCTTTCCAAGCAAGAGGACTGCTGTGG
GACAGTGGGGACGTCCTGGGGCTTTAACAAATGCCAGAAGTGCCCCAAGAAACAATCCTATCATGGATAT
ACTCAAATGATGGAATGCCTACAAGGATATAAACGGGTTAACAACACCTTTTGTCAAGATATTAATGAAT
GTCAGCTACAAGGTGTATGCCCTAATGGTGAGTGTTTGAATACCATGGGCAGCTACAGATGCTCCTGCAA
AATGGGATTCGGGCCTGACCCTACCTTTTCAAGTTGTGTTCCGGATCCCCCTGTGATCTCAGAAGAGAAA
GGGCCCTGTTACCGCCTTGTCAGTCCTGGAAGGCATTGTATGCACCCTCTCTCTGTTCATCTCACCAAGC
AGATCTGCTGTTGTAGTGTGGGCAAGGCCTGGGGCCCACATTGTGAGAAATGTCCCCTCCCAGGCACAGC
TGCTTTTAAGGAAATCTGTCCTGGTGGAATGGGTTATACGGTTTCTGGCGTTCATAGACGCAGGCCAATC
CATCAGCATATAGGTAAAGAAGCTGTATATGTCAAGCCAAAGAACACTCAACCTGTTGCTAAAAGTACTC
ATCCTCCACCTCTCCCAGCCAAGGAAGAGCCTGTGGAGGCCCTGACCTCCTCGTGGGAACACGGGCCGAG
AGGGGCGGAGCCCGAAGTGGTAACAGCACCTCCTGAGAAGGAAATACCTTCACTGGATCAAGAGAAAACC
AGACTTGAACCTGGGCAACCCCAGCTCTCCCCAGGGGTTTCAACTATTCATCTGCACCCACAGTTTCCAG
TAGTGGTTGAAAAGACATCCCCTCCTGTGCCTGTGGAAGTAGCTCCTGAAGCTTCCACATCCAGTGCCAG
CCAAGTGATTGCTCCTACGCAAGTAACAGAAATCAACGAATGTACTGTGAACCCGGACATTTGCGGAGCA
GGACACTGCATCAACCTGCCGGTGCGGTATACCTGCATATGCTACGAGGGCTACAAGTTCAGTGAACAGC
TGAGGAAATGTGTCGACATTGATGAATGTGCTCAGGTCCGGCACCTCTGCTCCCAGGGTCGCTGTGAGAA
CACAGAGGGAAGTTTCCTGTGTGTCTGCCCGGCAGGGTTTATGGCCAGTGAGGAGGGTACTAACTGTATA
GATGTGGATGAGTGCCTGAGGCCTGATATGTGTAGGGATGGCCGCTGCATCAACACCGCTGGGGCCTTCC
GGTGCGAGTACTGTGACAGTGGGTACCGGATGTCACGGAGAGGCTACTGTGAGGATATTGATGAGTGTCT
GAAGCCAAGCACTTGTCCCGAGGAACAGTGTGTGAACACCCCGGGCTCTTACCAGTGTGTGCCCTGCACA
GAGGGGTTCCGCGGCTGGAATGGACAATGCCTTGATGTGGACGAGTGCCTGCAGCCAAAGGTCTGTACGA
ATGGTTCCTGCACCAACCTGGAAGGGTCCTACATGTGTTCCTGCCACAGGGGCTACAGCCCCACACCAGA
CCATAGACACTGTCAAGATATTGATGAATGCCAACAAGGGAATCTCTGCATGAATGGGCAGTGCAGAAAT
ACCGATGGCTCCTTCCGGTGTACCTGTGGACAGGGCTATCAGCTGTCAGCAGCTAAAGACCAATGTGAAG
ATATTGATGAATGCGAGCACCATCACCTCTGCTCTCACGGGCAGTGCAGGAACACAGAGGGCTCCTTCCA
GTGTGTGTGCAACCAGGGTTACAGAGCATCTGTACTTGGAGACCACTGTGAGGATATCAATGAATGCTTG
GAGGACAGCAGTGTCTGCCAGGGAGGTGACTGCATCAATACTGCGGGGTCCTATGATTGCACATGCCCGG
ATGGATTCCAGCTGAACGACAATAAGGGCTGTCAAGACATTAATGAATGTGCACAGCCAGGACTCTGTGG
ATCTCATGGGGAGTGTCTAAACACACAAGGCTCCTTCCACTGTGTCTGTGAACAGGGGTTCTCCATCTCT
GCCGATGGCCGTACATGCGAAGATATTGATGAGTGTGTTAACAACACTGTGTGTGACAGTCACGGCTTCT
GTGACAACACAGCCGGCTCTTTCCGCTGCCTCTGTTATCAGGGCTTTCAAGCCCCACAGGATGGGCAAGG
GTGTGTGGATGTGAACGAGTGTGAACTGCTCAGTGGTGTATGTGGGGAAGCCTTCTGTGAAAACGTGGAA
GGATCCTTCCTGTGTGTGTGTGCCGATGAGAACCAGGAGTACAGCCCCATGACTGGGCAGTGTCGCTCTC
GGGTCACGGAAGATTCAGGTGTGGATCGTCAGCCTAGAGAAGAGAAGAAGGAGTGCTATTATAACCTCAA
TGATGCTAGTCTCTGTGATAATGTCCTGGCCCCCAACGTCACCAAACAAGAGTGCTGCTGTACGTCAGGT
GCCGGCTGGGGAGACAACTGTGAGATCTTCCCTTGCCCCGTCCAGGGAACTGCTGAGTTCACGGAAATGT
GCCCTAGAGGGAAAGGTTTGGTCCCGGCTGGAGAATCCTCTTACGACACTGGTGGCGAGAACTACAAAGA
TGCTGATGAATGCTTGCTGTTTGGAGAGGAAATCTGTAAAAATGGTTACTGTTTGAACACTCAACCTGGG
TATGAATGCTACTGTAAGCAAGGGACATACTATGATCCTGTCAAATTACAGTGCTTTGATATGGATGAAT
GCCAAGACCCTAACAGTTGCATTGACGGCCAGTGTGTGAACACAGAGGGCTCCTACAACTGCTTTTGCAC
CCACCCAATGGTCCTGGATGCCTCTGAGAAGAGATGTGTGCAACCAACTGAATCAAATGAACAAATAGAA
GAGACCGATGTCTATCAAGATCTGTGCTGGGAGCATCTGAGTGAGGAGTACGTGTGTAGCCGTCCTCTCG
TAGGCAAGCAGACGACGTACACAGAATGCTGCTGTTTGTACGGGGAGGCTTGGGGCATGCAGTGTGCTCT
GTGCCCCATGAAGGACTCAGATGACTATGCCCAGCTGTGCAATATCCCTGTGACTGGGCGTCGGCGGCCA
TATGGACGGGATGCATTGGTGGACTTCAGTGAACAGTATGGCCCAGAAACAGACCCTTACTTCATCCAGG
ATCGCTTTCTAAATAGCTTTGAGGAGCTACAGGCTGAGGAGTGTGGCATCCTCAATGGTTGTGAAAACGG
CCGCTGTGTGAGAGTCCAGGAAGGATACACTTGCGATTGCTTTGATGGATATCACCTGGATATGGCCAAG
ATGACCTGTGTCGATGTAAATGAATGCAGCGAGCTGAATAATCGGATGTCTCTCTGCAAGAACGCCAAGT
GCATTAACACAGAAGGCTCCTACAAATGCTTGTGTCTGCCAGGCTACATACCATCCGACAAGCCCAACTA
CTGTACACCCCTGAACAGCGCTTTGAATTTAGACAAAGAAAGTGACCTGGAGTGA

Translation (1394 aa):
MDTKLMCLLFFLCLPLLLVSNHTGRIKVVFTPSICKVTCTKGNCQNSCQKGNTTTLISENGHAADTLTAT
NFRVVICHLPCMNGGQCSSRDKCQCPPNFTGKLCQIPVLGASMPKLYQHAQQQGKALGSHVIHSTHTLPL
TMTSQQGVKVKFPPNIVNIHVKHPPEASVQIHQVSRIDSPGGQKVKEAQPGQSQVSYQGLPVQKTQTVHS
TYSHQQLIPHVYPVAAKTQLGRCFQETIGSQCGKALPGLSKQEDCCGTVGTSWGFNKCQKCPKKQSYHGY
TQMMECLQGYKRVNNTFCQDINECQLQGVCPNGECLNTMGSYRCSCKMGFGPDPTFSSCVPDPPVISEEK
GPCYRLVSPGRHCMHPLSVHLTKQICCCSVGKAWGPHCEKCPLPGTAAFKEICPGGMGYTVSGVHRRRPI
HQHIGKEAVYVKPKNTQPVAKSTHPPPLPAKEEPVEALTSSWEHGPRGAEPEVVTAPPEKEIPSLDQEKT
RLEPGQPQLSPGVSTIHLHPQFPVVVEKTSPPVPVEVAPEASTSSASQVIAPTQVTEINECTVNPDICGA
GHCINLPVRYTCICYEGYKFSEQLRKCVDIDECAQVRHLCSQGRCENTEGSFLCVCPAGFMASEEGTNCI
DVDECLRPDMCRDGRCINTAGAFRCEYCDSGYRMSRRGYCEDIDECLKPSTCPEEQCVNTPGSYQCVPCT
EGFRGWNGQCLDVDECLQPKVCTNGSCTNLEGSYMCSCHRGYSPTPDHRHCQDIDECQQGNLCMNGQCRN
TDGSFRCTCGQGYQLSAAKDQCEDIDECEHHHLCSHGQCRNTEGSFQCVCNQGYRASVLGDHCEDINECL
EDSSVCQGGDCINTAGSYDCTCPDGFQLNDNKGCQDINECAQPGLCGSHGECLNTQGSFHCVCEQGFSIS
ADGRTCEDIDECVNNTVCDSHGFCDNTAGSFRCLCYQGFQAPQDGQGCVDVNECELLSGVCGEAFCENVE
GSFLCVCADENQEYSPMTGQCRSRVTEDSGVDRQPREEKKECYYNLNDASLCDNVLAPNVTKQECCCTSG
AGWGDNCEIFPCPVQGTAEFTEMCPRGKGLVPAGESSYDTGGENYKDADECLLFGEEICKNGYCLNTQPG
YECYCKQGTYYDPVKLQCFDMDECQDPNSCIDGQCVNTEGSYNCFCTHPMVLDASEKRCVQPTESNEQIE
ETDVYQDLCWEHLSEEYVCSRPLVGKQTTYTECCCLYGEAWGMQCALCPMKDSDDYAQLCNIPVTGRRRP
YGRDALVDFSEQYGPETDPYFIQDRFLNSFEELQAEECGILNGCENGRCVRVQEGYTCDCFDGYHLDMAK
MTCVDVNECSELNNRMSLCKNAKCINTEGSYKCLCLPGYIPSDKPNYCTPLNSALNLDKESDLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH