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Report for CCDS37661.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37661.1 Public Mus musculus 17 Fsd1 23 108 98 CCDS HistoryNCBI Gene:240121Re-query CCDS DB by CCDS ID:37661.1Re-query CCDS DB by GeneID:240121See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37661.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000011733.8 ENSMUSP00000011733.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000011733.8Link to Ensembl Protein Viewer:ENSMUSP00000011733.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000011733Re-query CCDS DB by Protein ID:ENSMUSP00000011733
Original member NCBI NM_183178.2 NP_899001.1 Updated not alive Link to Nucleotide Sequence:NM_183178.2Link to Protein Sequence:NP_899001.1Re-query CCDS DB by Nucleotide ID:NM_183178Re-query CCDS DB by Protein ID:NP_899001
Current member NCBI NM_183178.3 NP_899001.1 Accepted alive Link to Nucleotide Sequence:NM_183178.3Link to Protein Sequence:NP_899001.1Re-query CCDS DB by Nucleotide ID:NM_183178Re-query CCDS DB by Protein ID:NP_899001Link to BLAST:NP_899001.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_899001.1 496 Q7TPM6-1 496 100% 0 0

Chromosomal Locations for CCDS 37661.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 55986639 55986653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55987743 55987838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55988124 55988255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55988674 55988775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55990212 55990234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55990419 55990540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55991167 55991376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55993843 55993941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55995357 55995516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55995858 55995937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55996072 55996323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55996421 55996509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55996642 55996752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1491 nt):
ATGGAAGACCAGAGGGAGGCGCTAAGAAAAATCATCACTACCCTGGCCATGAAGAATGAGGAGACGCAGA
CCTTCATCTACTCCCTGAAGCAGATGTTGCTGAATGTAGAGGCAAACTCAGCCAAAGTCCAGGAGGATCT
GGAAGCCGAGTTCCAGTCCCTCACGTCGGTTCTGGAGGAGCTGAAAGAGTCCATGCTGATGAAGATCAAA
CAGGACAGGGCCAGCCGCACCTACGAGCTGCAGAACCAGCTAGCTGCCTGCACACGAGCCCTGGAGAGCT
CCGAGGAGCTCCTGGAAACAGCCAACCAGACCCTGCAGGCTTCAGACAGCGAGGACTTCAGTCAGGCCGC
CAAGGAAATCAAAGATGGCATAACTATGGCCCCTGCCTTCCGACTATCGCTCAAAGCCAAGGTGAGCGAC
AATATGAGTCACCTCATGGTGGACTTCGCCCAGGAAAGGCAGATGCTACAGGCCCTCAAGTTCCTACCTG
TGCCCAGCGCCCCCACCATCGACTTGGCAGAGTCCCTCGTGTCAGATAACTGTGTGACGCTGGTATGGCA
CATGCCAGATGAGGACAGCAAGATCGACCACTATGTGCTGGAGTACCGCAAGACCAATTTCGAGGGCCCA
CCCCGCCTCAAGGAGGACCACCCCTGGATGGTTGTCGAGGGCATCCGGCAGACCGAGCACACCTTGACAG
GTCTCAAATTTGACATGAAATACATGAACATTCGTGTGAAAGCCTGTAACAAGGCGGTGGCTGGTGAATT
CTCCGAGCCGGTGACCTTAGAGACACCAGCATTCATGTTCCGCCTGGACGGGTCCACATCTCACCAGAAC
CTGCGAGTGGAAGATCTCTCTGCCGAGTGGGACGCCATGGGCGGGAAGGTCCAAGATATCAAGGCTCGAG
AGAAAGAGGGCAAGGGACGGACCGCATCCCCTGTAAACTCTCCAGCCAGAGGGACTCCATCTCCCAAGAG
GATGTCCTCAGGTCGTGGGGGCCGGGACCGGTTCACAGCTGAGTCTTACACGGTGCTGGGGGACACACTG
ATTGATGGTGGCGAGCACTACTGGGAGGTGCGCTTCGAACCAGACAGCAAGGCCTTTGGCTTGGGTGTGG
CCTACCGCAGCCTGGGCCGATTCGAGCAGCTGGGCAAGACGGCTGCATCATGGTGCCTGCATGCCAACAA
CTGGCTGCAGGCCAGCTTCACCGCCAAGCACGCCAACAAGGTCAAAGTGCTGGACAGCCCTGTGCCTGAC
TGCCTGGGTGTGCACTGCGACTTCCACCAAGGCCTCCTATCTTTCTACAATGCCCGCACCAAACAGCTCC
TGCACACCTTCAAGGCCAAGTTCACGCAGCCTCTGCTTCCAGCCTTCACCGTATGGTGTGGAAGCTTCCA
GGTGACAACAGGCCTGCAGGTGCCCAGTGCCGTGCGCTGCCTGCAGAAGCGGGGCAGTGCCACTAGCAGT
TCCAATACCAGCCTCACCTAG

Translation (496 aa):
MEDQREALRKIITTLAMKNEETQTFIYSLKQMLLNVEANSAKVQEDLEAEFQSLTSVLEELKESMLMKIK
QDRASRTYELQNQLAACTRALESSEELLETANQTLQASDSEDFSQAAKEIKDGITMAPAFRLSLKAKVSD
NMSHLMVDFAQERQMLQALKFLPVPSAPTIDLAESLVSDNCVTLVWHMPDEDSKIDHYVLEYRKTNFEGP
PRLKEDHPWMVVEGIRQTEHTLTGLKFDMKYMNIRVKACNKAVAGEFSEPVTLETPAFMFRLDGSTSHQN
LRVEDLSAEWDAMGGKVQDIKAREKEGKGRTASPVNSPARGTPSPKRMSSGRGGRDRFTAESYTVLGDTL
IDGGEHYWEVRFEPDSKAFGLGVAYRSLGRFEQLGKTAASWCLHANNWLQASFTAKHANKVKVLDSPVPD
CLGVHCDFHQGLLSFYNARTKQLLHTFKAKFTQPLLPAFTVWCGSFQVTTGLQVPSAVRCLQKRGSATSS
SNTSLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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