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Report for CCDS37653.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37653.1 Public Mus musculus 17 Pp2d1 23 108 98 CCDS HistoryNCBI Gene:110332Re-query CCDS DB by CCDS ID:37653.1Re-query CCDS DB by GeneID:110332See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 37653.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056198.3 ENSMUSP00000056682.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056198.3Link to Ensembl Protein Viewer:ENSMUSP00000056682.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000056198Re-query CCDS DB by Protein ID:ENSMUSP00000056682
Original member Current member NCBI NM_173449.3 NP_775625.1 Accepted alive Link to Nucleotide Sequence:NM_173449.3Link to Protein Sequence:NP_775625.1Re-query CCDS DB by Nucleotide ID:NM_173449Re-query CCDS DB by Protein ID:NP_775625Link to BLAST:NP_775625.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775625.1 620 Q8BVT6 620 100% 0 0

Chromosomal Locations for CCDS 37653.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 53507832 53508598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 53514941 53516004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 53539179 53539210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1863 nt):
ATGAATTGGGAACTGTATTCTTCTCCTTTAAGAGTGTTTTGGAGATCAAAAGTGTGGGATGAGAAAACTT
CA
ACATTTACTTCTGATGAGAATCTCAAGATTGGCAAAATGGTTGGCAAAAGGAGAAGGCCTAGACCAAA
G
CGCTCCATCGACCTGGAGGATTCCACTGAGCAGCTGATTTCTGGTGACATGGTCACATTCCCCTGCTCT
GTC
TGCTACCGAGAACTGAACAAAGCTAGGAATTTTCTCCATAAGAAACATCACAATGCTCTGAGTATGC
TG
GGTTTCCAGTGGATGGGAGGGAGGCAACCAAAGCCCAAACTGGTCAGTCTTCATAGAGAGTGTATAAT
C
TCTAACCTTTTGAGATCTTCTACATACAATGAAAAAGTCCTTCACAATGTGAACTACGCATTTGAGTTT
CTT
TGGAAGAAACAAGTTCCATCATACTTCAAACTTTGTGATAAGGTTGGCGAGACTTCTACGTATTCTC
CA
AACAGCAACCATCTGATGATTAAAGGTATAGCCATCTGTAGCAATAATAATTCAGCCTGGAAAGCGGA
G
CCGAACTGTAAATTCACGGTCGTGAACGATTTTGGTGATAAGGCCAATGTGTGCTTTTTCGGTTTATTT
GAT
AGCCATTACGGTTATGCAGCAGCAGACCTGGCATCAAAGGAGTTTCAGGTTTTACTTCTCCATCAAT
TG
TCTATACAGGATCCTTCCTACCAAATGACAGCTGAGCAGAAGCAACTCATCAATTCCTTTGACACGGT
G
TTCAGGGAGGAATACAGAGCCAGAGAAGAGGCCTTCTCTTCCACATACAAAACCTTCAGAACTAGTAGA
CGG
GAGTATGAGGATACACACAAAGCCTTTGCAAAGGCATTTTGGAGAATGGATAGGCTTCTACGGCTTG
GA
AGGAATGAGACTTCCCGGGTTCGCTGGAGCGGCTGCTCGGCACTCACTTGTATATTAGAGGGTGGGAT
T
AAGAACCCACATGCTAATAAAGACTGGGAAAAAACCTATCAGCAGGGTTCCACCAGTCTTCCCTTCCAG
AAG
ACTCCACAGATCATATCTGGAGTACTACACCTGGCAAATGCTGGAAACGTGCAAGCAGTCTTATGCA
GA
AATGGAAAAGGGTTTTGCCTGACCAAGGAACACAGTACACGAAACACCAAAGAAAGAAGAAGAGTCCT
T
TACAGCGAAGCAGTGATCAGTTCAGATGACCCCTATGGCCTCCTGGATGGGCACATCAAAACCACCCGG
GGT
CTTGGATTCCATGGAAACCTCAGACTAAAAAAGTCCATTATTCCAGCACCGCAAACAATCTCTGTCC
CT
ATAGATGATCTATGTCAGTTTCTCATCTTAGCCACTAATGGACTTTGGCAAGTTTTGGACAAGAAGGA
A
GTCACTGCACTGGTAATCACCTTGTTTCATGCATATAAAGAAACCCATGTTCCTCGCCCTAAAAGCAAA
CCC
TGGCCACCTATAGGCCTTCTTTCCCCACCAGACAGTAACATCCGAGTGCTGTTCCAGTACCAGCCTG
AA
AATGAAGACATTATGTCAACTGCAGATGGGACGAAAGGGCTATCTGACTCAATATATGCTGAAGCTTA
C
ACTCATCAGGGTACATTTTCTCCAAAAGTGACCCCTTATGACCCTTGTAGCACAAAAGAAAATAGCAGC
TTA
CCCACTATAGACAGTAAGCAGGAAAATGAGAAAGAACTATGTATTAAGAATTTCTACAAAGGTGCAG
CT
GAGTACATTGGCTGTGAACTTGTAAGTGCTGCAATAGAAGGGGGTTCCAGAGACAGCATCACTGTTAT
G
GTAATGTTTCTCAATGGGAGCGAGTATCACAGGCTGACATAA


Translation (620 aa):
MNWELYSSPLRVFWRSKVWDEKTSTFTSDENLKIGKMVGKRRRPRPKRSIDLEDSTEQLISGDMVTFPCS
V
CYRELNKARNFLHKKHHNALSMLGFQWMGGRQPKPKLVSLHRECIISNLLRSSTYNEKVLHNVNYAFEF
L
WKKQVPSYFKLCDKVGETSTYSPNSNHLMIKGIAICSNNNSAWKAEPNCKFTVVNDFGDKANVCFFGLF
D
SHYGYAAADLASKEFQVLLLHQLSIQDPSYQMTAEQKQLINSFDTVFREEYRAREEAFSSTYKTFRTSR
R
EYEDTHKAFAKAFWRMDRLLRLGRNETSRVRWSGCSALTCILEGGIKNPHANKDWEKTYQQGSTSLPFQ
K
TPQIISGVLHLANA
GNVQAVLCRNGKGFCLTKEHSTRNTKERRRVLYSEAVISSDDPYGLLDGHIKTTR
G
LGFHGNLRLKKSIIPAPQTISVPIDDLCQFLILATNGLWQVLDKKEVTALVITLFHAYKETHVPRPKSK
P
WPPIGLLSPPDSNIRVLFQYQPENEDIMSTADGTKGLSDSIYAEAYTHQGTFSPKVTPYDPCSTKENSS
L
PTIDSKQENEKELCIKNFYKGAAEYIGCELVSAAIEGGSRDSITVMVMFLNGSEYHRLT




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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