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Report for CCDS37606.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37606.1 Public Mus musculus 17 Gnl1 23 108 98 CCDS HistoryNCBI Gene:14670Re-query CCDS DB by CCDS ID:37606.1Re-query CCDS DB by GeneID:14670See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37606.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087200.3 ENSMUSP00000084450.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087200.3Link to Ensembl Protein Viewer:ENSMUSP00000084450.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000087200Re-query CCDS DB by Protein ID:ENSMUSP00000084450
Original member Current member NCBI NM_008136.2 NP_032162.2 Accepted alive Link to Nucleotide Sequence:NM_008136.2Link to Protein Sequence:NP_032162.2Re-query CCDS DB by Nucleotide ID:NM_008136Re-query CCDS DB by Protein ID:NP_032162Link to BLAST:NP_032162.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032162.2 607 P36916-1 607 100% 0 0

Chromosomal Locations for CCDS 37606.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 35980175 35980247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35980617 35980782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35981062 35981198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35981307 35981458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35981558 35981629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35982525 35982732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35982947 35983042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35983395 35983589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35987465 35987643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35987725 35987887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35988113 35988253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35988521 35988762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1824 nt):
ATGCCGAGGAAGAAGCCCTTCAGCGTGAAGCAGAAGAAGAAGCAGCTGCAGGACAAGCGGGAGCGGAAGC
GAGGGCTCCAAGATGGGCTGCGCTCCAGTTCCAACAGCCGCAGCGGTAGCCGGGAGCGGCGGGAGGAGCA
GACGGACACGTCGGATGGGGAATCCGTGACCCATCATATCCGCAGGCTCAACCAGCAACCTTCCCAGGGC
CTGGGGCCCAGAGGCTACGACCCCAACCGATACCGGCTGCATTTTGAACGGGACAGCCGGGAGGAGGTGG
AGAGGAGAAAGAGAGCGGCCAGAGAGCAAGTGTTGCAGCCGGTCAGTGCTGAAGTGTTAGAGTTGGATAT
CCGGGAAGTGTATCAGCCTGGCTCAGTCCTGGACTTTCCCCGGCGGCCTCCTTGGAGTTATGAGATGTCC
AAGGAACAGCTAATGAGCCAGGAGGAGCGGAGCTTCCAGGAATACCTTGGGAAGATACACGGGGCATACA
CTTCAGAGAAACTCAGCTACTTTGAGCACAATCTGGAGACATGGAGGCAGCTGTGGCGGGTGTTAGAGAT
GTCTGACATCGTCCTGCTCATTACTGACATCCGACATCCGGTTGTGAACTTCCCACCAGCACTTTACGAG
TATGTAACTGGAGAGCTTGGGCTGGCCCTGGTGCTGGTCTTGAACAAGGTGGACCTGGCCCCGCCGGCTC
TCGTGGTTGCCTGGAAGCATTATTTTCACCAGTGCTACCCCCAGCTCCACATTGTCTTGTTCACCTCTTT
CCCTCGGGACACGCGCACTCCACAGGAGCCTGGTGGTGTCTTGAAGAAGAATCGGAGACGGGGGAAAGGA
TGGACTCGGGCACTGGGACCAGAGCAGTTGCTGAGAGCCTGTGAAGCTATCACTGTGGGGAAAGTGGACT
TGAGCAGCTGGCGCGAGAAGATTGCTAGGGACGTGGCTGGAGCCTCCTGGGGTAACGTCTCCGGTGAGGA
AGAGGAGGAGGAAGACGGGCCAGCAGTACTGGTAGAGCAGCTGACCGACTCAGCCATGGAGCCCACAGGC
CCCTCCAGGGAGCGCTACAAGGATGGGGTGGTGACTATTGGCTGTATAGGTTTCCCCAATGTGGGGAAGT
CCTCTCTGATCAACGGGCTGGTGGGGCGGAAGGTGGTGAGTGTCTCCAGAACGCCAGGCCACACCCGGTA
TTTTCAGACCTACTTTCTGACCCCCTCTGTGAAGCTCTGTGACTGCCCGGGCCTTATCTTCCCCTCGCTG
CTGCCCAGGCAGCTGCAGGTTCTGGCTGGAATCTACCCCATTGCCCAGATCCAGGAGCCCTACACTTCTG
TGGGCTACCTGGCCTCCAGAATCCCCGTGCAGGCCCTGCTGCACCTGCGCCACCCAGAGGCAGAGGACCC
TTCGGCTGAGCACCCCTGGTGTGCCTGGGACATCTGTGAAGCTTGGGCAGAGAAACGTGGTTATAAAACG
GCCAAGGCAGCTCGAAATGACGTGTACAGAGCGGCCAATAGCCTACTTCGCCTGGCAGTGGATGGCCGCC
TCAGCCTATGTTTCTACCCTCCTGGTTACAGCGAACAGAGAGGCACCTGGGAGTCTCACCCAGAGACTGC
AGAGCTGGTGCTGTCGCAGGGCAGGGTGGGGCCGGCAGGTGATGAGGAGGAGGAAGAGGAGGAGGAACTG
AGCAGCTCCTGTGAGGAGGAAGGAGAGGAGGACCGGGATGCAGATGAAGAGGGAGAAGGAGATGAGGACA
CCCCAACTTCAGATCCTGGGTCCTGCCTAACAGCCCGAAACCCGTATGCCCTGCTCGGGGAGGATGAGTG
CTGA

Translation (607 aa):
MPRKKPFSVKQKKKQLQDKRERKRGLQDGLRSSSNSRSGSRERREEQTDTSDGESVTHHIRRLNQQPSQG
LGPRGYDPNRYRLHFERDSREEVERRKRAAREQVLQPVSAEVLELDIREVYQPGSVLDFPRRPPWSYEMS
KEQLMSQEERSFQEYLGKIHGAYTSEKLSYFEHNLETWRQLWRVLEMSDIVLLITDIRHPVVNFPPALYE
YVTGELGLALVLVLNKVDLAPPALVVAWKHYFHQCYPQLHIVLFTSFPRDTRTPQEPGGVLKKNRRRGKG
WTRALGPEQLLRACEAITVGKVDLSSWREKIARDVAGASWGNVSGEEEEEEDGPAVLVEQLTDSAMEPTG
PSRERYKDGVVTIGCIGFPNVGKSSLINGLVGRKVVSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPSL
LPRQLQVLAGIYPIAQIQEPYTSVGYLASRIPVQALLHLRHPEAEDPSAEHPWCAWDICEAWAEKRGYKT
AKAARNDVYRAANSLLRLAVDGRLSLCFYPPGYSEQRGTWESHPETAELVLSQGRVGPAGDEEEEEEEEL
SSSCEEEGEEDRDADEEGEGDEDTPTSDPGSCLTARNPYALLGEDEC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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