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Report for CCDS37590.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37590.1 Public Mus musculus 17 Agpat1 23 108 98 CCDS HistoryNCBI Gene:55979Re-query CCDS DB by CCDS ID:37590.1Re-query CCDS DB by GeneID:55979See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37590.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037489.14 ENSMUSP00000048573.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037489.14Link to Ensembl Protein Viewer:ENSMUSP00000048573.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000037489Re-query CCDS DB by Protein ID:ENSMUSP00000048573
Original member Current member EBI ENSMUST00000114140.9 ENSMUSP00000109776.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114140.9Link to Ensembl Protein Viewer:ENSMUSP00000109776.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000114140Re-query CCDS DB by Protein ID:ENSMUSP00000109776
Original member Current member EBI ENSMUST00000174595.1 ENSMUSP00000134358.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000174595.1Link to Ensembl Protein Viewer:ENSMUSP00000134358.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000174595Re-query CCDS DB by Protein ID:ENSMUSP00000134358
Original member NCBI NM_001163379.1 NP_001156851.1 Updated not alive Link to Nucleotide Sequence:NM_001163379.1Link to Protein Sequence:NP_001156851.1Re-query CCDS DB by Nucleotide ID:NM_001163379Re-query CCDS DB by Protein ID:NP_001156851
Current member NCBI NM_001163379.2 NP_001156851.1 Accepted alive Link to Nucleotide Sequence:NM_001163379.2Link to Protein Sequence:NP_001156851.1Re-query CCDS DB by Nucleotide ID:NM_001163379Re-query CCDS DB by Protein ID:NP_001156851Link to BLAST:NP_001156851.1
Original member NCBI NM_018862.3 NP_061350.3 Updated not alive Link to Nucleotide Sequence:NM_018862.3Link to Protein Sequence:NP_061350.3Re-query CCDS DB by Nucleotide ID:NM_018862Re-query CCDS DB by Protein ID:NP_061350
Current member NCBI NM_018862.4 NP_061350.3 Accepted alive Link to Nucleotide Sequence:NM_018862.4Link to Protein Sequence:NP_061350.3Re-query CCDS DB by Nucleotide ID:NM_018862Re-query CCDS DB by Protein ID:NP_061350Link to BLAST:NP_061350.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156851.1 285 O35083 285 99.6491% 0 1
NP_061350.3 285 O35083 285 99.6491% 0 1

Chromosomal Locations for CCDS 37590.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 34610454 34610644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34610872 34611005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34611274 34611449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34611605 34611700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34611791 34611866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34612253 34612437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (858 nt):
ATGGAGCTGTGGCCCGGGGCCTGGACGGCGCTGCTGCTGCTGCTGCTCCTGCTGCTGTCCACCCTGTGGT
TCTGCAGCTCCAGTGCCAAGTATTTCTTTAAGATGGCCTTCTACAACGGCTGGATCCTCTTCCTGGCGAT
CCTCGCAATCCCCGTGTGTGCTGTGCGAGGGCGCAATGTCGAGAACATGAAGATCTTGCGTCTGCTGCTG
CTCCACGTCAAATACCTGTATGGGATCCGAGTGGAGGTGCGCGGGGCTCACCACTTCCCTCCCACGCAGC
CCTACGTGGTTGTGTCCAACCACCAGAGTTCCCTCGACCTGCTTGGAATGATGGAGGTCCTGCCAGATCG
TTGTGTGCCCATTGCCAAGCGTGAGCTACTATGGGCTGGCTCTGCTGGGCTGGCCTGCTGGCTGGCAGGA
ATCATCTTCATTGACCGGAAACGCACAGGGGACGCCATCAGTGTCATGTCCGAGGTGGCTCAGACCTTGC
TCACCCAGGATGTGAGAGTCTGGGTTTTTCCTGAAGGAACAAGAAACCACAATGGCTCCATGCTGCCCTT
CAAACGAGGCGCCTTCCACCTTGCAGTACAGGCCCAGGTCCCCATCATCCCCATCGTCATGTCCTCCTAT
CAAGACTTCTACTCCAAAAAGGAAAGACGCTTCACCTCGCCTGGACGTTGTCAGGTGCGGGTGCTGCCTC
CAGTGTCCACAGAAGGGCTGACACCAGATGACGTCCCAGCTCTGGCAGACAGCGTCCGGCACTCCATGCT
CACCATCTTCCGGGAGATCTCCACTGACGGCCTGGGTGGTGGCGACTGTCTGAAGAAGCCTGGGGGAGCG
GGCGAAGCCCGGCTCTGA

Translation (285 aa):
MELWPGAWTALLLLLLLLLSTLWFCSSSAKYFFKMAFYNGWILFLAILAIPVCAVRGRNVENMKILRLLL
LHVKYLYGIRVEVRGAHHFPPTQPYVVVSNHQSSLDLLGMMEVLPDRCVPIAKRELLWAGSAGLACWLAG
IIFIDRKRTGDAISVMSEVAQTLLTQDVRVWVFPEGTRNHNGSMLPFKRGAFHLAVQAQVPIIPIVMSSY
QDFYSKKERRFTSPGRCQVRVLPPVSTEGLTPDDVPALADSVRHSMLTIFREISTDGLGGGDCLKKPGGA
GEARL


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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