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Report for CCDS37576.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37576.1 Public Mus musculus 17 Slc39a7 23 108 98 CCDS HistoryNCBI Gene:14977Re-query CCDS DB by CCDS ID:37576.1Re-query CCDS DB by GeneID:14977See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37576.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025186.15 ENSMUSP00000025186.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025186.15Link to Ensembl Protein Viewer:ENSMUSP00000025186.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000025186Re-query CCDS DB by Protein ID:ENSMUSP00000025186
Original member Current member EBI ENSMUST00000169397.8 ENSMUSP00000130102.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169397.8Link to Ensembl Protein Viewer:ENSMUSP00000130102.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169397Re-query CCDS DB by Protein ID:ENSMUSP00000130102
Original member Current member NCBI NM_001077709.1 NP_001071177.1 Accepted alive Link to Nucleotide Sequence:NM_001077709.1Link to Protein Sequence:NP_001071177.1Re-query CCDS DB by Nucleotide ID:NM_001077709Re-query CCDS DB by Protein ID:NP_001071177Link to BLAST:NP_001071177.1
Original member Current member NCBI NM_008202.2 NP_032228.2 Accepted alive Link to Nucleotide Sequence:NM_008202.2Link to Protein Sequence:NP_032228.2Re-query CCDS DB by Nucleotide ID:NM_008202Re-query CCDS DB by Protein ID:NP_032228Link to BLAST:NP_032228.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001071177.1 476 Q31125 476 100% 0 0
NP_032228.2 476 Q31125 476 100% 0 0

Chromosomal Locations for CCDS 37576.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 34028796 34029068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34029510 34029706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34029846 34029983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34030090 34030254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34030368 34030421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34030566 34030734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34030824 34031258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1431 nt):
ATGACCATGGGCCTGCGGGCCCCCCACTGGGTGGCTGTGGGACTGCTGACCTGGGCGGCTTTGGGGCTGC
TGGTGGCCGGACACGAGGGTCATGGTGACCTGCACAAAGATGTGGAAGAGGACTTCCATGGCCACAGTCA
CGGGCACTCACATGAAGATTTCCACCATGGCCACAGCCACGGGCACTCGCATGAAGATTTCCACCATGGC
CACGGCCACACTCATGAAAGCATCTGGCATGGGCATGCCCACAGCCACGACCATGGACACTCACGTGAGG
AATTACACCATGGCCATAGCCATGGCCACTCCCACGATAGCCTCCACCACGGAGGACATGGACATGCCCA
TCGTGAACATAGCCATGGGACTTCTAGGGAGGCTGGGGCTCCAGGCATCAAACACCACCTGGACACTGTC
ACCCTCTGGGCCTACGCACTGGGGGCCACAGTGCTGATCTCCGCAGCTCCGTTCTTCGTGCTGTTCCTCA
TCCCAGTAGAATCTAACTCTCCCAGGCACCGCTCTCTGCTCCAGATCCTGCTCAGTTTTGCTTCCGGGGG
GCTCCTGGGTGATGCGTTCCTCCACCTCATCCCGCATGCCTTGGAACCTCATTCTCACCACGCTCCAGAG
CAGCCTGGACATGGACACTCCCACAGTGGCCAGGGCCCCATTCTCTCTGTGGGGCTGTGGGTTCTCAGTG
GGATTGTCGCCTTCCTCGTGGTGGAGAAATTTGTGAGACACGTGAAAGGAGGACATGGACACAGTCACGG
ACACGGAGACAGGCATGCGCATGGAGACAGTCACACCCATGGAGATAGACATGAGTGTTCTTCAAAGGAA
AAGCCCAGCACAGAGGAAGAGAAGGAAGTGGGCGGGTTGCGGAAAAGGAGAGGAGGAAACACTGGGCCCA
GAGATGGCCCGGTGAAACCTCAGAGCCCTGAAGAAGAAAAAGCAGGCTCAGACCTGCGTGTGTCTGGGTA
CCTGAATCTGGCTGCTGACTTGGCACACAACTTCACAGACGGTCTGGCCATTGGTGCTTCCTTTCGTGGG
GGCCGAGGGCTAGGGATCCTGACCACAATGACAGTCCTGCTGCACGAAGTGCCTCATGAGGTTGGGGATT
TTGCCATCCTGGTCCAGTCTGGCTGCAGCAAGAAGCAGGCGATGCGTCTGCAACTCGTGACTGCAATTGG
AGCATTGGCAGGCACTGCCTGTGCCCTTCTCACCGAGGGAGGGGCAGTGGACAGTGACGTGGCAGGTGGT
GCAGGTCCTGGCTGGGTCCTGCCATTCACTGCAGGCGGATTTATCTACGTAGCAACAGTGTCTGTGCTGC
CTGAGCTATTGAGAGAGGCATCTCCACTGCAGTCACTGTTGGAGGTGCTGGGGCTGCTGGGGGGTGTTGC
CATGATGGTACTGATTGCCCATCTTGAGTGA

Translation (476 aa):
MTMGLRAPHWVAVGLLTWAALGLLVAGHEGHGDLHKDVEEDFHGHSHGHSHEDFHHGHSHGHSHEDFHHG
HGHTHESIWHGHAHSHDHGHSREELHHGHSHGHSHDSLHHGGHGHAHREHSHGTSREAGAPGIKHHLDTV
TLWAYALGATVLISAAPFFVLFLIPVESNSPRHRSLLQILLSFASGGLLGDAFLHLIPHALEPHSHHAPE
QPGHGHSHSGQGPILSVGLWVLSGIVAFLVVEKFVRHVKGGHGHSHGHGDRHAHGDSHTHGDRHECSSKE
KPSTEEEKEVGGLRKRRGGNTGPRDGPVKPQSPEEEKAGSDLRVSGYLNLAADLAHNFTDGLAIGASFRG
GRGLGILTTMTVLLHEVPHEVGDFAILVQSGCSKKQAMRLQLVTAIGALAGTACALLTEGGAVDSDVAGG
AGPGWVLPFTAGGFIYVATVSVLPELLREASPLQSLLEVLGLLGGVAMMVLIAHLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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