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Report for CCDS37510.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37510.1 Public Mus musculus 17 Pdia2 23 108 98 CCDS HistoryNCBI Gene:69191Re-query CCDS DB by CCDS ID:37510.1Re-query CCDS DB by GeneID:69191See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 37510.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039113.13 ENSMUSP00000035584.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039113.13Link to Ensembl Protein Viewer:ENSMUSP00000035584.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000039113Re-query CCDS DB by Protein ID:ENSMUSP00000035584
Original member Current member NCBI NM_001081070.1 NP_001074539.1 Accepted alive Link to Nucleotide Sequence:NM_001081070.1Link to Protein Sequence:NP_001074539.1Re-query CCDS DB by Nucleotide ID:NM_001081070Re-query CCDS DB by Protein ID:NP_001074539Link to BLAST:NP_001074539.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074539.1 527 D3Z6P0-1 527 100% 0 0

Chromosomal Locations for CCDS 37510.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 26196082 26196126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26196224 26196331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26196420 26196601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26196682 26196802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26196892 26197089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26197162 26197287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26197433 26197549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26197617 26197754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26197832 26197965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26198054 26198260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26198826 26199033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1584 nt):
ATGGACAAGCAGCTTCTGCCAGTGTTGCTGCTCCTGCTGGGTGTCTCAGGCTCATGGGGACAGGGAGAAG
AGCCTGGGGGTCCTTCAGAGGTGCTCCCTGAGGAGCCCACTGGGGAAGAAGTCCCCAAGGAGGATGGTAT
CTTGGTCTTGAACCACCGAACCCTGAGCCTGGCACTGCAGGAGCATTCAGCCCTGATGGTGGAGTTTTAT
GCCCCATGGTGTGGTCACTGCAAAGAACTAGCTCCCGAGTACAGCAAGGCGGCTGCCCTGCTGGCGGCTG
AGTCAGCTGTGGTCACCTTGGCCAAGGTGGATGGCCCTGCGGAACCGGAGCTGACCAAGGAGTTTGAAGT
GGTAGGGTACCCTACACTCAAGTTCTTCCAGAATGGAAACCGCACAAACCCAGAAGAGTACGCAGGGCCC
AAGACTGCTGAGGGCATTGCTGAGTGGCTGAGGCGGCGAGTGGGGCCCAGTGCCACACATCTGGAGGATG
AGGAAGGTGTCCAGGCACTGATGGCCAAATGGGATATGGTGGTCATTGGCTTCTTTCAGGATCTACAGGG
AAAGGATATGGCAACTTTCCTGGCCTTGGCCAAGGATGCCCTGGACATGACCTTTGGCTTCACTGACCAG
CCACAACTTTTTGAGAAGTTTGGCCTCACCAAGGATACTGTGGTCCTTTTCAAGAAGTTTGATGAGGGTC
GGGCCGACTTCCCGGTAGACAAGGAGACTGGCCTGGACCTGGGGGACCTGTCCCGCTTCCTCGTCATACA
TAGCATGCACCTGGTCACAGAATTCAACAGCCAGACATCACCTAAGATCTTTGCAGCCAAGATCCTCAAC
CACCTGCTGCTGTTTGTGAACCAGACACTAGCTCAACACAGGGAACTGCTGACAGACTTCAGAGAGGCAG
CTCCTCCATTCAGGGGGCAGGTGTTGTTCGTAATGGTGGATGTGGCTGCTGACAACAGCCATGTGCTGAA
TTATTTTGGCCTCAAGGCTGAGGAAGCCCCCACCCTGCGTCTGATCAATGTTGAGACTACCAAGAAGTAT
GCACCTACAGGGGTGATAGCCATCACTGCAGCTTCTGTGGCTGCCTTCTGCCAGGCAGTTCTCCATGGGG
AAATCAAGCACTATCTCCTGAGTCAGGAGATACCCCCTGACTGGGACCAGGGGCCAGTCAAGACTCTCGT
GAGCAAGAATTTTGAGCAGGTTGCCTTTGATGAAACCAAGAATGTGTTTGTCAAGTTCTATGCCCCATGG
TGCAGCCACTGCAAGGAGATGGCTCCAGCCTGGGAGGCATTGGCAGAGAAGTACAAGGATCGTGAGGACA
TTGTCATTGCCGAGTTGGATGCTACAGCTAATGAGCTGGAGGCCTTCTCTGTGCTCGGCTATCCCACTCT
CAAGTTCTTTCCTGCAGGGCCTGACCGAAAGGTTATAGACTACAAAAGCACTAGGGACCTAGAGACATTC
TCCAAGTTCCTGGACAGCGGAGGTCACCTGCCTAAGGAGGAACCCAAGGAGCCTGCAGCCTCTGCCCCAG
AAGCACAAGCCAATTCCACCTTGGGTCCCAAGGAGGAGCTGTAG

Translation (527 aa):
MDKQLLPVLLLLLGVSGSWGQGEEPGGPSEVLPEEPTGEEVPKEDGILVLNHRTLSLALQEHSALMVEFY
APWCGHCKELAPEYSKAAALLAAESAVVTLAKVDGPAEPELTKEFEVVGYPTLKFFQNGNRTNPEEYAGP
KTAEGIAEWLRRRVGPSATHLEDEEGVQALMAKWDMVVIGFFQDLQGKDMATFLALAKDALDMTFGFTDQ
PQLFEKFGLTKDTVVLFKKFDEGRADFPVDKETGLDLGDLSRFLVIHSMHLVTEFNSQTSPKIFAAKILN
HLLLFVNQTLAQHRELLTDFREAAPPFRGQVLFVMVDVAADNSHVLNYFGLKAEEAPTLRLINVETTKKY
APTGVIAITAASVAAFCQAVLHGEIKHYLLSQEIPPDWDQGPVKTLVSKNFEQVAFDETKNVFVKFYAPW
CSHCKEMAPAWEALAEKYKDREDIVIAELDATANELEAFSVLGYPTLKFFPAGPDRKVIDYKSTRDLETF
SKFLDSGGHLPKEEPKEPAASAPEAQANSTLGPKEEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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