NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS37373.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37373.1 Public Mus musculus 16 Nsun3 23 108 98 CCDS HistoryNCBI Gene:106338Re-query CCDS DB by CCDS ID:37373.1Re-query CCDS DB by GeneID:106338See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37373.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063089.11 ENSMUSP00000059720.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063089.11Link to Ensembl Protein Viewer:ENSMUSP00000059720.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000063089Re-query CCDS DB by Protein ID:ENSMUSP00000059720
Original member NCBI NM_178925.3 NP_849256.1 Updated not alive Link to Nucleotide Sequence:NM_178925.3Link to Protein Sequence:NP_849256.1Re-query CCDS DB by Nucleotide ID:NM_178925Re-query CCDS DB by Protein ID:NP_849256
Current member NCBI NM_178925.4 NP_849256.1 Accepted alive Link to Nucleotide Sequence:NM_178925.4Link to Protein Sequence:NP_849256.1Re-query CCDS DB by Nucleotide ID:NM_178925Re-query CCDS DB by Protein ID:NP_849256Link to BLAST:NP_849256.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_849256.1 348 Q8CCT7-1 348 100% 0 0

Chromosomal Locations for CCDS 37373.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 62735115 62735418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 62769607 62769728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 62770658 62770812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 62776288 62776631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 62785788 62785897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 62786671 62786682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1047 nt):
ATGCTGACTCGGCTGAAAGCAAAATCAGAGGGGAAGCTTGCCAAACAGCTATGCAGAGTTGTGTTGGATC
AGTTTGACAAACAGTATTCGAAAGAACTTGGGGATTCCTGGAGTACAGTAAGGGATGTTCTGATATCTCC
ATCACTATGGCAATATGCCATCCTCTTCAACCGATTCAATTATCCCTTTGAACTGGAAAAGGCCTTGCAT
CTGAGGGGCTATCACACAGTCCTTCAAGGGGCTTTACCACATTATCCTAAATCAATGAAGTGTTACCTCA
GCCGAACCCCAGACCGAATGCCTTCAGAAAGACATCAGACTGGAAGCTTGAAAAAGTACTACCTCCTTAA
TGCTGCTTCTCTTCTCCCAGTACTGGCTCTGGAACTGAGAGACGGGGAGGCAGTCCTGGACTTGTGTGCT
GCTCCTGGAGGCAAATCCGTAGCTCTGCTGCAATGTGCTTATCCAGGTTATCTTCTCTGTAACGAGTATG
ATCGCCCGAGAGGAAGATGGCTGAGACAGACGTTGGAATCTTTCATCCCACAGCCTTTGATAAATGTAAT
TAAAGTGTCTGAATTGGATGGCAGAGAAATGGGAGATGCCCAGCCTGCAACATTTGACAAGGTGTTAGTT
GACGCTCCATGTTCAAATGATCGAAGCTGGCTGTTCTCGTCGGACTCTCAGAAAGCTGCCTATAGGATCC
ATCAAAGGAAGAATTTGCCTGTCCTACAGGTAGAACTCGTAAGGTCTGCAATTAAAGCCTTGCGCCCCGG
AGGGCTCCTCGTGTACTCTACATGCACGCTTTCCAAGGCTGAAAATCAAGATGTGATCAGCGAGGTCTTA
ACTTCCGACAGTAACATCGTACCTGTGGATATTAGTGGGATAGCAAGGACTTTCTCCCAAGACTTCACAT
TTGCCCCTACTGACCAGAAATGCAGCCTTTTGGTGATTCCGGAAAAGGGCAAAGCTTGGGGCCCAATGTA
TATAGCCAAACTGAAAAAAGGGATGAGTACAAGAAAAAGGCAAGGCGAATTTTGTAAGCCATGCTGA

Translation (348 aa):
MLTRLKAKSEGKLAKQLCRVVLDQFDKQYSKELGDSWSTVRDVLISPSLWQYAILFNRFNYPFELEKALH
LRGYHTVLQGALPHYPKSMKCYLSRTPDRMPSERHQTGSLKKYYLLNAASLLPVLALELRDGEAVLDLCA
APGGKSVALLQCAYPGYLLCNEYDRPRGRWLRQTLESFIPQPLINVIKVSELDGREMGDAQPATFDKVLV
DAPCSNDRSWLFSSDSQKAAYRIHQRKNLPVLQVELVRSAIKALRPGGLLVYSTCTLSKAENQDVISEVL
TSDSNIVPVDISGIARTFSQDFTFAPTDQKCSLLVIPEKGKAWGPMYIAKLKKGMSTRKRQGEFCKPC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH