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Report for CCDS37146.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37146.1 Public Mus musculus 15 Tnrc6b 23 108 98 CCDS HistoryNCBI Gene:213988Re-query CCDS DB by CCDS ID:37146.1Re-query CCDS DB by GeneID:213988See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37146.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067689.8 ENSMUSP00000064336.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067689.8Link to Ensembl Protein Viewer:ENSMUSP00000064336.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000067689Re-query CCDS DB by Protein ID:ENSMUSP00000064336
Original member Current member NCBI NM_144812.3 NP_659061.2 Accepted alive Link to Nucleotide Sequence:NM_144812.3Link to Protein Sequence:NP_659061.2Re-query CCDS DB by Nucleotide ID:NM_144812Re-query CCDS DB by Protein ID:NP_659061Link to BLAST:NP_659061.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659061.2 1810 Q8BKI2-1 1810 100% 0 0

Chromosomal Locations for CCDS 37146.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 80759586 80759630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80784739 80784806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80858681 80858768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80864385 80864406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80876317 80876661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80878867 80881206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80882944 80883102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80884207 80884382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80886959 80887033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80887830 80887875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80889019 80889155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80894329 80894454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80901884 80902015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80902288 80902386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80902520 80902712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80913305 80913442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80916684 80916860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80917951 80918097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80918511 80918606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80923458 80923682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80924086 80924156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80927600 80927739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80929089 80929476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5433 nt):
ATGCAAACCAATGAGGGAGAAGTAGAGGAAGAAAGCAGCTCCCAGGTGGAACAGGAGGATTTTGTAATGG
AAGGGCATGGCAAGACTCCACCTCCTGGAGAAGAAAGCAAACAAGAGAAGGAGCAAGAAAGGGAAGAACA
GTTAATGGAAGACAAGAAAAGGAAGAAAGAGGATAAAAAGAAAAAAGAAGCCACCCAGAAGGTCACGGAA
CAAAAAACCAAAGTGCCCGAAGTGACGAAACCAAGTTTAAGCCAACCAACGGCCGCCAGCCCAATTGGCA
GCTCTCCATCGCCACCAGTCAATGGTGGCAACAATGCCAAAAGGGTGGCAGTGCCGAACGGACAACCGCC
AAGCGCCGCCCGCTACATGCCTCGGGAGGTGCCACCGCGATTCCGTTGCCAGCAGGACCATAAAGTGTTA
CTAAAACGTGGGCAGCCCCCTCCACCGTCCTGCATGCTCCTCGGGGGTGGGGCGGGGCCTCCTCCCTGCA
CAGCACCTGGAGCAAACCCCAACAACAACGCACAAGTGACAGGAGCGCTGCTGCAGAGTGAGAGTGGGAC
TGCACCAGAGTCAACCCTTGGAGGTGCTGCTGCTTCAAATTATGCAAATTCCACTTGGGGCCCGGGAGCC
TCCTCCAACAGCGGCGCCTCCCCCAACCCAATTCACATCTGGGACAAGGTGATTGTAGACGGGTCTGACA
TGGAAGAGTGGCCTTGTATTGCCAGCAAAGACACTGAATCTTCTTCCGAAAACACCACCGATAACAACAG
TGCCTCGAACCCTGGCTCTGAGAAGAGCAGTCTGCCAGGAAGCACCACTAGTAACAAAGGCAAAGGGAGC
CAATGCCAGGCTGCAAGTTCTGGGAACGAATGTAATCTTGGGGTCTGGAAATCTGACCCCAAGGCTAAGT
CTGTTCAACCTCCCAACTCTACTTCAGATAGCAACAATGGACTAGGAAACTGGAGGAGCACGAGTGGTCA
GGATAGAATTGGACCTGGCTCTGGCTTCAGCAACTTTAACCCAAATAGCAACCCATCTGCCTGGCCAGCA
TTGGTCCAAGAAGGGACTTCTAGAAAAGGGGCATTGGAAACAGAAAGTAGTAGTTCCAGTGCACAAGTTA
GCACAGTAGGTCAGGCATCCAGGGAACAGCAGTCAAAGATGGAAAATGCGGGTGTTAATTTTGTTGTCTC
TGGCAGAGAACAGGCTCAAATTCATAACACTGATGGACCAAAAAATGGAAACACTAACTCCTTGAACTTA
AGTTCACCAAACCCCATGGAAAATAAGGGAATGCCCTTTGGAATGGGCTTGGGGAACACCTCCAGGAGCA
CTGATGCCCCTTCACAAAGCACTGGAGATCGAAAGACTGGGAGTGTTGGGTCTTGGGGTGCAGCTAGGGG
GCCTTCTGGAACTGACACAGTCTCTGGACAAAGCAATTCTGGAAATAATGGGAACAATGGAAAAGACAGA
GAGGACTCCTGGAAAGGAGCTTCTGTTCCAAAACCAACTGGGTCAAAAAGTGACTCTTGGGACAACAATA
ACAGGTCTACGGGTGGGTCCTGGAACTTTGGCCCTCAGGACAATAATGACAACAAATGGGGTGAAGGGAA
CAAAATGACATCTGGGGTCTCTCAGGGAGAATGGAAACAGCCGACTGGGTCTGATGAGTTGAAAATTGGA
GAATGGAGTGGTCCAAACCAACCAAATTCTAGCACTGGAGCATGGGACAATCAAAAGGGCCACCCCCTCC
CTGAAAACCAAGGCAATGCCCAGGCTCCCTGTTGGGGAAGATCTTCCAGCTCCGCAGGAAGTGAAGTTGG
AGGTCAAAGCACTGGAAGCAACCACAAAGCAGGAAGTAGTGACAGTCATAATTCTGGTCGTCGGTCATAT
AGGCCCACGCATCCTGATTGCCAGGCTGTCTTGCAGACTCTTTTGAGCCGGACTGATTTGGACCCTAGGG
TGCTCTCAAACACTGGCTGGGGCCAAACTCAAATTAAGCAGGACACAGTGTGGGATATTGAAGAGGTGCC
AAGGCCTGAGGGGAAATCTGACAAAGGAACTGAGGGGTGGGAGAGCGCTGCCACACAGACCAAGAACTCA
GGGGGCTGGGGAGATGCACCCAGCCAAAGCAATCAAATGAAGTCTGGATGGGGGGAGCTCTCAGCCTCGA
CAGAGTGGAAAGACCCCAAGAGCACAGGAGGCTGGAATGACTATAAGAACAACAACTCTTCTAACTGGGG
AGGAGGCCGAGCAGATGAAAAGACACCTTCCTCTTGGAATGAGAGTTCTTGTAAGGATCAGGGGTGGGGA
GGTGGGCGCCAACCCAACCAAGGATGGACTTCTGGGAAGAATGGTTGGGGCGAGGAGGTGGATCAAGTGA
AAAATAATAATTGGGAAAGTTCTGCCAATAAGCCTGTGTCTGGGTGGGGTGAAGGAGGACAGAATGAAAT
TGGAACTTGGGGTAATGGTGGGAATACAAACCTAGCATCAAAAGGTGGGTGGGAAGATTGCAAAAGATCC
CCTGCATGGAATGAGACAGGCAGACAGCCCAATTCCTGGAATAAACAACACCAACAGCAGCAGCAGCCAC
CGCCACCACAGCCAGAGGCTTCTGGTTCATGGGGAGGCCCACCCCCGCCACCTCAAGGCAATGTTCGACC
TTCTAATTCCAACTGGAGCAGTGGACCCCAGCCTACAACCCCTAAGGATGATGAACCCAGTGGTTGGGAG
GAGCCATCCCCACAGTCAATTAGTCGGAAAATGGACATTGATGATGGCACTTCAGCTTGGGGAGACCCTA
ACAGTTATAACTACAAGAATGTGAACCTTTGGGATAAGAATTCTCAAGGGGGCCCAGCACCTCGAGAACC
AAACCTGCCTACCCCAATGACCGGGAAATCAGCATCAGTCTGGAGCAAAAGCACACCACCTGCTCCAGAT
AATGGGACTTCAGCCTGGGGTGAGCCAAATGAAAGCAGTCCTGGGTGGGGTGAAATGGATGATGCAGGAG
CATCAACCACAGGCTGGGGAAACACACCTGCCAACGCTCCCAATGCCATGAAACCCAATTCCAAATCTAT
GCAAGACGGCTGGGGGGAGAGTGACGGACCAGTCACAGGAGCTCGCCATCCTAGCTGGGAAGAGGAGGAT
GACGGAGGAGTCTGGAACACCGCCGGCTCTCAGGGAAGCACTTCCTCCCACAACTCAGCAAGCTGGGGAC
AAGGAGGAAAGAAACAAATGAAGTGCTCACTAAAAGGAGGAAACAATGATTCATGGATGAATCCTCTTGC
CAAACAGTTTTCAAATATGGGATTGCTGAGTCAAACTGAGGATAACCCAAGCAGCAAAATGGATTTGTCT
GTAGATAAGAAATTTGATGTGGACAAGAGAACAATGAATCTCGGGGATTTTAATGATATCATGAGGAAGG
ATCGACCTGGGTTCCGTCCACCTAATTCCAAAGACTTGGGAACCACAGACAGTGGGCCTTATTTTGAGAA
GGGCGGCAGTCATGGTTTGTTTGGAAACAGCACAGCACAATCGAGAGGCCTGCACACTCCAGTGCAGCCA
CTAAGTTCTTCTCCTGGTCTCCGGGCGCAAGTGCCTCCCCAGTTTATCTCCCCCCAGGTTTCTGCCTCAA
TGCTCAAGCAGTTCCCCAACAGTGGCCTGAATCCAGGTCTCTTTAATGTGGGGCCCCAGCTATCTCCTCA
ACAGATTGCCATGCTGAGCCAGCTTCCACAGATACCCCAGTTTCAGTTGGCATGTCAGCTTCTCCTGCAG
CAGCAGCAGCAACAGCAGCAGTTGCTACAGAACCAGAGAAAGATTTCTCAAGCAGTGCGCCAGCAGCAAG
AACAGCAGCTGGCAAGAATGGTGAGTGCTCTCCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGAGGCA
GCCTAGCATGAAGCATTCACCTTCTCATCCTGTTGGGCCTAAGCCACATTTGGACAACATGGTACCCAAT
GCGCTGAATGTGGGGCTCCCAGACCTTCCAACCAAAGGGCCAATTCCTGGATATGGTTCTGGCTTCAGCT
CTGGTGGCATGGACTATGGTATGGTTGGTGGCAAGGAGGCTGGGACCGAGTCTCGCTTCAAACAGTGGAC
CTCAATGATGGAAGGGCTGCCATCTGTGGCCACACAAGAAGCCACCATGCACAAAAACGGCGCTATAGTG
GCCCCTGGTAAGACCCGAGGAGGTTCACCATACAACCAGTTTGATATAATCCCAGGTGACACACTGGGTG
GCCATACGGGTCCTGCTGGTGATAGCTGGTTACCTGCCAAATCTCCACCGACTAATAAAATCGGAAGTAA
ATCCAGCAATGCCAGTTGGCCTCCAGAATTCCAACCAGGAGTGCCATGGAAAGGTATCCAAAATATTGAC
CCTGAATCTGACCCCTATGTCACCCCAGGAAGTGTGCTAGGGGGTACAACCACATCTCCCATTGTAGATA
CTGACCACCAACTGCTGCGGGATAACACCACAGGGTCTAATTCCTCCCTCAACACCTCGCTGCCTTCACC
TGGTGCCTGGCCCTACAGTGCCTCTGACAACTCCTTTACCAACGTTCATAGCACTTCAGCAAAGTTCCCT
GATTATAAATCCACGTGGTCCCCAGATCCCATAGGACACAACCCCACTCATCTCTCCAATAAGATGTGGA
AAAATCACATCTCCTCCAGGAACACTACACCGCTGACCCGCCCACCTCCTGGCCTGACCAACCCCAAACC
GGCATCTCCTTGGAGCAGCACAGCACCGCGATCGGTCAGGGGGTGGGGGACACAGGACTCCCGGATTGCC
TCGGCCTCTACCTGGAGTGATGGTGGCTCTGTCCGTCCTAGTTACTGGCTGGTTCTCCACAATCTCACCC
CACAGATTGATGGGTCAACCCTGAGAACGATCTGCATGCAGCATGGCCCACTGCTGACATTCCATCTGAA
CCTAACCCAGGGCACTGCCCTGATCCGATACAGCACCAAACAAGAGGCAGCCAAGGCCCAGACTGCACTG
CACATGTGTGTGTTGGGAAACACTACCATCCTGGCCGAGTTTGCCACTGAGGATGAAGTCAGCCGCTTTC
TGGCTCAAGCTCAGCCCCCTACGCCTGCAGCCACCCCGAGTGCACCTGCCACAGGGTGGCAGTCCCTGGA
GACCAGCCAGAACCAAGCAGACCCCGTTGGACCTGCGCTGAACCTTTTCGGTGGGTCCACCGGGCTCGGG
CAGTGGAGCAGCAGCGCTGGTGGCAGCAGTGGGGCCGATCTTGCCGGCACTTCCTTGTGGGGCCCCCCAA
ACTATTCTTCTAGCTTGTGGGGAGTCCCGACGGTGGAAGATCCCCATAGGATGGGCAGCCCTGCTCCTTT
ACTACCTGGTGACCTTCTGGGAGGAGGGTCGGATTCAATCTGA

Translation (1810 aa):
MQTNEGEVEEESSSQVEQEDFVMEGHGKTPPPGEESKQEKEQEREEQLMEDKKRKKEDKKKKEATQKVTE
QKTKVPEVTKPSLSQPTAASPIGSSPSPPVNGGNNAKRVAVPNGQPPSAARYMPREVPPRFRCQQDHKVL
LKRGQPPPPSCMLLGGGAGPPPCTAPGANPNNNAQVTGALLQSESGTAPESTLGGAAASNYANSTWGPGA
SSNSGASPNPIHIWDKVIVDGSDMEEWPCIASKDTESSSENTTDNNSASNPGSEKSSLPGSTTSNKGKGS
QCQAASSGNECNLGVWKSDPKAKSVQPPNSTSDSNNGLGNWRSTSGQDRIGPGSGFSNFNPNSNPSAWPA
LVQEGTSRKGALETESSSSSAQVSTVGQASREQQSKMENAGVNFVVSGREQAQIHNTDGPKNGNTNSLNL
SSPNPMENKGMPFGMGLGNTSRSTDAPSQSTGDRKTGSVGSWGAARGPSGTDTVSGQSNSGNNGNNGKDR
EDSWKGASVPKPTGSKSDSWDNNNRSTGGSWNFGPQDNNDNKWGEGNKMTSGVSQGEWKQPTGSDELKIG
EWSGPNQPNSSTGAWDNQKGHPLPENQGNAQAPCWGRSSSSAGSEVGGQSTGSNHKAGSSDSHNSGRRSY
RPTHPDCQAVLQTLLSRTDLDPRVLSNTGWGQTQIKQDTVWDIEEVPRPEGKSDKGTEGWESAATQTKNS
GGWGDAPSQSNQMKSGWGELSASTEWKDPKSTGGWNDYKNNNSSNWGGGRADEKTPSSWNESSCKDQGWG
GGRQPNQGWTSGKNGWGEEVDQVKNNNWESSANKPVSGWGEGGQNEIGTWGNGGNTNLASKGGWEDCKRS
PAWNETGRQPNSWNKQHQQQQQPPPPQPEASGSWGGPPPPPQGNVRPSNSNWSSGPQPTTPKDDEPSGWE
EPSPQSISRKMDIDDGTSAWGDPNSYNYKNVNLWDKNSQGGPAPREPNLPTPMTGKSASVWSKSTPPAPD
NGTSAWGEPNESSPGWGEMDDAGASTTGWGNTPANAPNAMKPNSKSMQDGWGESDGPVTGARHPSWEEED
DGGVWNTAGSQGSTSSHNSASWGQGGKKQMKCSLKGGNNDSWMNPLAKQFSNMGLLSQTEDNPSSKMDLS
VDKKFDVDKRTMNLGDFNDIMRKDRPGFRPPNSKDLGTTDSGPYFEKGGSHGLFGNSTAQSRGLHTPVQP
LSSSPGLRAQVPPQFISPQVSASMLKQFPNSGLNPGLFNVGPQLSPQQIAMLSQLPQIPQFQLACQLLLQ
QQQQQQQLLQNQRKISQAVRQQQEQQLARMVSALQQQQQQQQQQQRQPSMKHSPSHPVGPKPHLDNMVPN
ALNVGLPDLPTKGPIPGYGSGFSSGGMDYGMVGGKEAGTESRFKQWTSMMEGLPSVATQEATMHKNGAIV
APGKTRGGSPYNQFDIIPGDTLGGHTGPAGDSWLPAKSPPTNKIGSKSSNASWPPEFQPGVPWKGIQNID
PESDPYVTPGSVLGGTTTSPIVDTDHQLLRDNTTGSNSSLNTSLPSPGAWPYSASDNSFTNVHSTSAKFP
DYKSTWSPDPIGHNPTHLSNKMWKNHISSRNTTPLTRPPPGLTNPKPASPWSSTAPRSVRGWGTQDSRIA
SASTWSDGGSVRPSYWLVLHNLTPQIDGSTLRTICMQHGPLLTFHLNLTQGTALIRYSTKQEAAKAQTAL
HMCVLGNTTILAEFATEDEVSRFLAQAQPPTPAATPSAPATGWQSLETSQNQADPVGPALNLFGGSTGLG
QWSSSAGGSSGADLAGTSLWGPPNYSSSLWGVPTVEDPHRMGSPAPLLPGDLLGGGSDSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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