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Report for CCDS37069.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37069.1 Public Mus musculus 15 Sybu 23 108 98 CCDS HistoryNCBI Gene:319613Re-query CCDS DB by CCDS ID:37069.1Re-query CCDS DB by GeneID:319613See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37069.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090057.5 ENSMUSP00000087511.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090057.5Link to Ensembl Protein Viewer:ENSMUSP00000087511.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000090057Re-query CCDS DB by Protein ID:ENSMUSP00000087511
Original member NCBI NM_176998.4 NP_795972.2 Updated not alive Link to Nucleotide Sequence:NM_176998.4Link to Protein Sequence:NP_795972.2Re-query CCDS DB by Nucleotide ID:NM_176998Re-query CCDS DB by Protein ID:NP_795972
Current member NCBI NM_176998.5 NP_795972.2 Accepted alive Link to Nucleotide Sequence:NM_176998.5Link to Protein Sequence:NP_795972.2Re-query CCDS DB by Nucleotide ID:NM_176998Re-query CCDS DB by Protein ID:NP_795972Link to BLAST:NP_795972.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_795972.2 793 Q8BHS8-4 793 100% 0 0

Chromosomal Locations for CCDS 37069.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 44672547 44673648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44675366 44675515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44677535 44677738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44683348 44683450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44718788 44718985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44746246 44746462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44748309 44748398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44787589 44787906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2382 nt):
ATGCGCCCCCACCTACCCGTACAGAGTCTCCGGCCTCCGGCGACTGTCCCCACGTGTTCCGAAGCCCCAG
GTGCCGCCGTGCTGGCTCCAGAAGTCAAGAGGCCGAGGGGACCGGAGCGCGCTGGCAGCTGCCGCACCAC
GTGTGCTAACCGGGCTGGCGGCGCGGGCGGAGCGGGCCGGGGCTGGTTCCTCCAGCCCCAGCGCAAACCG
CTTGCCACGCGCTGTGTCGCCGGCCGGCGGCCCAGTCCAGCACAAGCCTCTAGGGCATTTGGGGACACTG
TCTGGACAGCGCAATGGACACGGTCTGCAAAGGAAACGGTGCCTCCTCCTGGACGGCGGCGGCGGCGGCA
GCGGCGGCGTGGGGAGCCGGCAGGCAGCAGCGAAATGGGGCCCCTCCGAGAGAGCAAGAAGGAGCAGAGA
GTGCAGCATCAGGAGAAAGAGATTTCCAGGAGCCGGATTCCCCGGTTGATTCTGCGGCCCCATCGGCCTC
AGCAGCAGCAACAGCAGCAGAACAAGGTTTCCCCAGCCTCCGAGTCTCCCTTTTCGGAGGAAGAAAGTAG
AGAGTTCAACCCCAGCAGCTCTGGACGCTCAGCAAGGACGATTAGCAGCAACAGCTTCTGCTCAGATGAC
ACAGGTTGTCCCAGCAGCCAGTCGGTATCGCCTGTGAAGACTCCTTCAGACACAGGGCACAGTCCCATTG
GCTTTTGCCCTGGAAGCGATGAAGACTTTACCAGGAAGAAATGCAGGATTGGAATGGTTGGTGAGGGAAG
TATTCAGTCAGCTCGTCATAAAAAAGAACCCAAGGGAGGCATCATAAAGCCAGGCAGTGAAGCAGATTTT
AGCTCCTCGAGCAGCACAGGCAGCATCTCGGCTCCTGAGGTCCACATGTCCACGACAGGAAACAAGAGAG
CCTCTTTCTCACGCAACCGAGGCCCTCATGGGCGGAGCAATGGAGCATCATCCCACAAGTCTGGCAGCAG
CCCACCATCCCCAAGGGAAAAAGACCTTGTGTCTATGCTGTGCAGGAATCCACTGAGCCCCAGTAACATC
CACCCTAGTTACGCCCCTTCTTCTCCAAGTAGCAGCAACTCCGGCTCCTACAAAGGAAGTGATTGTAGTC
CAGTCATGAGAAGGTCTGGAAGATACATGTCTTGTGGCGAAAATCACGGTGTCAAACCCCCAAATCCAGA
ACAGTATTTGACTCCTCTGCAGCAGAAGGAGGTCACAGTGAGGCACCTGAGGACCAAGCTGAAGGAGTCT
GAGCGCCGACTCCATGAGAGGGAATCTGAAATCATGGAGCTCAAGTCTCAGCTGGCTCGAATGAGGGAGG
ACTGGATTGAGGAAGAGTGCCACAGAGTGGAGGCTCAGTTGGCACTCAAAGAAGCCAGAAAAGAGATTAA
ACAGCTCAAACAGGTCATCGAGACTATGAGGAGCAGCTTGGCTGATAAAGATAAAGGCATTCAGAAGTAC
TTTGTGGACATAAACATCCAAAACAAGAAACTGGAGTCTCTGCTTCAAAGCATGGAGATGGCACACAATA
GTTCCCTGAGGGATGAACTGTGTCTTGACTTTTCCTTTGATTCCCCAGAGAAAAGTTTACCCCTGAGCAG
CACATTTGACAAGTTGCCAGATGGGTTATCTCTGGAAGAACAGATAACAGAGGAAGGTGCTGACAGTGAG
CTTCTGGTGGGAGACAGCATGGCTGAAGGCACAGATCTGTTAGATGAGATGGTGACTGCCACCACCACAG
AATCCAGTGGCCTGGAGTTTGTTCATTCCACTCCAGGGCCACAAGCCCTCAAGGCTCTCCCCTTGGTGAG
CCACGAAGAGGGCATTGCGGTGATGGAGCAAGCCGTGCAGACCGACGTGGTGCCGTTCAGCCCTGCCATC
TCAGAGCTCATTCAGAGTGTGCTAAAGCTGCAGGACTACTGTCCCACAAGCTCAGCATCTCCAGATGAAT
CTGGAGCTGACTCGATGGAAAGCTTCTCAGAATCTATCTCTGCCTTAATGCTTGATTTAACTCCAAGAAG
TCCTAACTCGGCCATCCTTCTGTCTCCTGTGGAGATCCCATTCAGCAAGGGGGCTATGGAAGCCCATGCA
AATCGCCTCATGAGAGAGCTAGATTTTGCAGCCTACACAGAAGAAAGATTGGACAGTGTCCTCTCACTGT
CCCAGGGCAGTGTTGTGAGGCAGTACTGGAGCAGCAATTTCTTGGTGGATCTACTGGCTGTGGCTGCCCC
TGTGGTACCCACTGTTCTGTGGGCATTCAGTACTCAGAGAGGGGGTACAGATCCTGTCTACAACATCGGA
GCTTTGCTCCGAGGTTGCTGTGTGGTGGCCCTACACTCACTACGCCGCACCGCTTTCCACATGAAAACCT
AA

Translation (793 aa):
MRPHLPVQSLRPPATVPTCSEAPGAAVLAPEVKRPRGPERAGSCRTTCANRAGGAGGAGRGWFLQPQRKP
LATRCVAGRRPSPAQASRAFGDTVWTAQWTRSAKETVPPPGRRRRRQRRRGEPAGSSEMGPLRESKKEQR
VQHQEKEISRSRIPRLILRPHRPQQQQQQQNKVSPASESPFSEEESREFNPSSSGRSARTISSNSFCSDD
TGCPSSQSVSPVKTPSDTGHSPIGFCPGSDEDFTRKKCRIGMVGEGSIQSARHKKEPKGGIIKPGSEADF
SSSSSTGSISAPEVHMSTTGNKRASFSRNRGPHGRSNGASSHKSGSSPPSPREKDLVSMLCRNPLSPSNI
HPSYAPSSPSSSNSGSYKGSDCSPVMRRSGRYMSCGENHGVKPPNPEQYLTPLQQKEVTVRHLRTKLKES
ERRLHERESEIMELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLADKDKGIQKY
FVDINIQNKKLESLLQSMEMAHNSSLRDELCLDFSFDSPEKSLPLSSTFDKLPDGLSLEEQITEEGADSE
LLVGDSMAEGTDLLDEMVTATTTESSGLEFVHSTPGPQALKALPLVSHEEGIAVMEQAVQTDVVPFSPAI
SELIQSVLKLQDYCPTSSASPDESGADSMESFSESISALMLDLTPRSPNSAILLSPVEIPFSKGAMEAHA
NRLMRELDFAAYTEERLDSVLSLSQGSVVRQYWSSNFLVDLLAVAAPVVPTVLWAFSTQRGGTDPVYNIG
ALLRGCCVVALHSLRRTAFHMKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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