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Report for CCDS37023.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37023.1 Public Mus musculus 14 Nalcn 23 108 98 CCDS HistoryNCBI Gene:338370Re-query CCDS DB by CCDS ID:37023.1Re-query CCDS DB by GeneID:338370See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37023.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000201.6 ENSMUSP00000000201.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000201.6Link to Ensembl Protein Viewer:ENSMUSP00000000201.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000000201Re-query CCDS DB by Protein ID:ENSMUSP00000000201
Original member Current member NCBI NM_177393.4 NP_796367.3 Accepted alive Link to Nucleotide Sequence:NM_177393.4Link to Protein Sequence:NP_796367.3Re-query CCDS DB by Nucleotide ID:NM_177393Re-query CCDS DB by Protein ID:NP_796367Link to BLAST:NP_796367.3

Chromosomal Locations for CCDS 37023.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 123278168 123278361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123281100 123281217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123283584 123283736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123285213 123285363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123287710 123287867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123290967 123291082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123291732 123291864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123293428 123293521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123294334 123294482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123295393 123295461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123298026 123298145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123298871 123298945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123299148 123299254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123299900 123299993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123302698 123302796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123302880 123303000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123308329 123308435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123314032 123314136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123315984 123316151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123316995 123317126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123317221 123317341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123317834 123317890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123321254 123321376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123321460 123321551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123323300 123323369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123323791 123323892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123348762 123348835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123369938 123370079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123371478 123371614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123396207 123396281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123409696 123409833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123460237 123460428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123464664 123464831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123486386 123486517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123507481 123507567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123515301 123515405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123515631 123515773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123571940 123572094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123592682 123592810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123592912 123593051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123594486 123594569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123596471 123596653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123599843 123599950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5220 nt):
ATGCTCAAAAGAAAGCAGAGTTCCAGGGTGGAAGCCCAGCCAGTTACTGACTTTGGTCCTGATGAATCTC
TGTCAGACAATGCTGACATACTCTGGATTAATAAGCCATGGGTGCACTCTCTGCTGCGCATCTGTGCCAT
CATCAGCGTCATCTCAGTGTGCATGAACACACCTATGACCTTTGAGCACTATCCTCCTCTTCAGTATGTG
ACCTTCACCTTGGACACTTTATTGATGTTCCTCTACACTGCAGAAATGATAGCAAAGATGCACATACGGG
GAATTGTCAAGGGTGATAGCTCCTATGTGAAGGATCGCTGGTGTGTTTTTGATGGATTCATGGTCTTTTG
CCTTTGGGTATCTCTTGTGTTACAGGTGTTTGAAATAGCTGACATAGTTGATCAGATGTCACCTTGGGGC
ATGCTGCGGATCCCACGGCCACTCATTATGATCCGGGCTTTCAGGATTTATTTCCGATTCGAACTGCCAA
GGACAAGAATTACAAACATTTTAAAGCGGTCAGGAGAACAAATATGGAGTGTTTCCATTTTCCTCCTTTT
CTTCCTTCTTCTGTATGGGATTTTAGGAGTTCAAATGTTTGGAACATTTACCTACCACTGTGTAGTCAAT
GACACAAAGCCAGGAAATGTAACCTGGAATAGCTTAGCTATTCCAGATACGCACTGCTCCCCAGAGCTAG
AAGAAGGCTATCAATGCCCGCCAGGATTTAAATGCATGGACCTGGAAGACCTGGGACTTAGCAGGCAAGA
GCTGGGCTACAGTGGCTTTAATGAGATAGGCACGAGTATATTCACAGTCTATGAGGCTTCATCTCAGGAA
GGCTGGGTATTCCTCATGTACAGAGCAATCGACAGCTTTCCCCGCTGGCGCTCCTACTTCTACTTCATCA
CACTGATTTTCTTCCTTGCTTGGCTTGTCAAGAATGTGTTTATTGCTGTCATCATTGAGACATTTGCAGA
AATCAGAGTACAATTTCAACAAATGTGGGGAACTCGGAGCAGCACAACTTCTACAGCCACCACACAGATG
TTCCATGAAGATGCCGCTGGTGGTTGGCAGCTGGTAGCTGTGGATGTCAACAAGCCCCAGGGACGTGCCC
CAGCCTGCCTACAGAAAATGATGCGGTCATCGGTTTTCCACATGTTTATCCTGAGCATGGTGACTGTGGA
TGTAATAGTTGCTGCCAGCAATTACTACAAGGGAGAGAACTTCAGAAGGCAGTATGATGAATTCTACCTT
GCAGAGGTGGCTTTTACAGTCCTTTTCGACCTGGAAGCACTCCTGAAGATATGGTGTTTGGGGTTTACTG
GCTACATCAGCTCATCTCTCCACAAGTTTGAACTATTGCTTGTTATTGGGACGACGCTTCATGTGTACCC
AGATCTTTATCATTCTCAGTTCACATACTTCCAGGTTCTGCGGGTAGTCCGGCTTATTAAGATTTCCCCA
GCATTGGAAGACTTTGTGTACAAGATATTTGGTCCTGGGAAAAAACTTGGAAGCTTGGTGGTGTTCACTG
CCAGCCTCCTGATAGTTATGTCAGCCATCAGTTTGCAGATGTTCTGTTTTGTCGAAGAACTGGACAGATT
CACCACTTTTCCAAGGGCATTTATGTCTATGTTCCAGATCCTCACCCAGGAAGGATGGGTGGATGTGATG
GATCAGACTCTGAATGCTGTGGGGCATATGTGGGCACCACTGGTTGCCATCTATTTCATCCTCTATCATC
TCTTTGCAACTTTGATCCTCCTGAGTTTGTTTGTTGCTGTTATTTTGGACAACTTAGAACTTGATGAAGA
TCTAAAGAAGCTCAAACAACTAAAGCAAAGTGAAGCGAACGCGGACACCAAAGAAAAACTCCCTTTGCGC
TTGAGAATCTTCGAAAAATTTCCAAACAGACCGCAAATGGTGAAAATCTCAAAACTTCCTTCAGATTTTA
CAGTTCCTAAAATCAGGGAAAGCTTCATGAAGCAGTTCATTGACCGCCAGCAACAGGACACCTGCTGTCT
CTTCAGAATCCTCCCCTCTACCTCTTCCTCATCATGTGACAACCCCAAGAAGCCCACAGCTGAAGACAAC
AAATACATTGATCAAAAACTCCGCAAGTCTGTTTTCAGCATAAGGGCGAGGAACCTACTGGAAAAGGAGA
CTGCAGTCACAAAAATCTTAAGAGCTTGCACTCGACAGCGCATGCTGAGCGGATCATTCGAGGGGCAGCC
AGCAAAGGAGAGGTCGATCCTCAGCGTGCAGCATCACATCCGCCAGGAGCGCAGGTCACTAAGACATGGA
TCCAACAGCCAGAGGATCAGCAGGGGGAAATCTCTTGAAACTTTAACTCAAGACCATTCAAATACAGTGC
GCTACAGAAATGCACAAAGAGAAGACAGTGAAATAAAAATGATTCAGGAGAAGAAGGAACAAGCCGAGAT
GAAAAGGAAGGTGCAAGAAGAGGAACTGCGGGAGAACCACCCATACTTTGACAAGCCTCTCTTCATCGTG
GGGCGGGAGCACAGGTTCAGAAACTTCTGCCGCGTGGTGGTTCGAGCACGCTTCAATGCATCCAAAACAG
ACCCTGTCACGGGAGCTGTGAAAAATACAAAGTACCACCAACTTTATGATTTGCTGGGACTTGTCACCTA
CCTGGACTGGGTCATGATCACTGTAACCATCTGCTCTTGCATTTCTATGATGTTCGAATCCCCCTTCCGA
AGAGTCATGCATGCACCCACTTTACAGATCGCAGAATATGTGTTTGTAATATTCATGAGCATTGAGCTTA
ATCTGAAGATTATGGCAGATGGCTTGTTTTTCACTCCAACTGCTGTCATCAGGGACTTTGGTGGCGTCAT
GGACATATTTATCTATCTTGTGAGTTTGATATTTCTTTGTTGGATGCCTCAAAATGTACCTGCCGAGTCA
GGAGCCCAGCTACTGATGGTTCTTCGGTGCCTAAGACCTCTTCGGATATTCAAACTTGTGCCCCAAATGA
GGAAAGTTGTTCGAGAACTTTTCAGTGGTTTCAAGGAAATATTTTTGGTCTCCATTCTGTTGTTGACGTT
AATGCTTGTTTTTGCAAGCTTTGGGGTTCAGCTCTTTGCTGGAAAGTTAGCCAAGTGCAACGACCCCAAC
ATTATCAGAAGGGAAGACTGTAATGGCATCTTCAGAATTAATGTAAGTGTGTCCAAGAACTTAAATTTAA
AACTAAGACCTGGAGAGAAAAAACCTGGATTTTGGGTGCCCCGTGTTTGGGCAAATCCTCGGAACTTTAA
CTTCGACAATGTGGGAAATGCCATGCTGGCATTATTTGAAGTTCTGTCCTTGAAAGGCTGGGTAGAAGTG
AGGGATGTCATTATTCATCGTGTGGGGCCGATCCACGGAATCTATATTCATGTTTTCGTATTCCTGGGTT
GCATGATCGGACTGACGCTTTTTGTCGGTGTAGTTATTGCTAACTTCAATGAAAACAAGGGGACAGCCCT
GCTGACGGTAGATCAGAGACGATGGGAAGATCTCAAGAGCAGACTGAAGATCGCACAGCCTCTTCATCTC
CCTCCTCGGCCGGATAATGATGGTTTTAGAGCTAAAATGTATGACATAACCCAGCATCCATTTTTTAAGA
GGACAATTGCATTGCTGGTTCTGGCCCAGTCTGTGTTGCTATCTGTCAAGTGGGATGTTGACGATCCTGT
GACGGTTCCTTTGGCAACAATGTCAGTTGTCTTCACCTTCATCTTTGTCTTAGAGGTTACAATGAAGATT
ATAGCAATGTCACCAGCTGGATTCTGGCAAAGCAGAAGAAACCGATATGATCTCTTGGTGACATCTCTTG
GTGTTGTGTGGGTGGTGCTCCATTTTGCTCTGCTGAATGCATACACCTACATGATGGGAGCCTGCGTGAT
TGTCTTTAGATTTTTCTCCATCTGTGGGAAGCATGTGACATTAAAGATGCTCCTTCTGACTGTGGTTGTC
AGCATGTACAAGAGCTTTTTTATCATCGTAGGAATGTTTCTCTTGCTGCTGTGCTATGCCTTTGCTGGAG
TTGTTCTGTTTGGTACCGTAAAGTATGGTGAGAACATTAACAGGCATGCCAATTTTTCCTCAGCTGGCAA
AGCCATTACTGTATTGTTTCGAATTGTCACAGGTGAAGACTGGAACAAGATTATGCATGATTGTATGGTT
CAACCTCCATTTTGTACTCCAGATGAATTTACATACTGGGCAACAGACTGTGGCAATTATGCAGGGGCAC
TTATGTACTTCTGCTCATTCTATGTCATCATTGCCTACATCATGCTGAATCTGCTTGTAGCCATAATTGT
GGAGAATTTCTCTTTGTTTTATTCCACTGAAGAGGACCAGCTTTTGAGTTACAATGATCTTCGCCATTTT
CAAATCATATGGAACATGGTAGATGATAAAAGAGAGGGTGTGATCCCCACTTTCCGAGTGAAGTTCCTGC
TACGGCTGCTGCGTGGGAGGCTGGAAGTGGATCTTGATAAAGACAAGCTCCTGTTTAAGCATATGTGCTA
TGAGATGGAGAGGCTGCACAATGGTGGTGATGTCACCTTCCATGATGTCTTAAGCATGCTCTCCTATCGC
TCTGTAGACATCAGAAAAAGCCTGCAGCTAGAGGAGCTGCTGGCAAGGGAGCAGCTAGAATACACCATAG
AGGAGGAGGTGGCTAAGCAGACTATTCGCATGTGGCTGAAGAAGTGCTTGAAACGCATCCGGGCTAAACA
ACAGCAGTCGTGCAGCATCATCCACAGCCTGAGAGAGAGCCAGGAGCAAGAGCGGAGCCGGCTATTCCTG
AATCCTCCCAGCATTGAGACCACCCAGCCAAGTGAGGACAGCAACGCCAACAGCCAGGACCACAGTATGC
AACCTGAGACAAGCAGTCAGCAGCAGCTCTTAAGCCCTACTCTGTCAGACAGAGGAGGAAGCCGACAGGA
TGCAGCAGATACTGGAAAACCCCAAAGGAAGATTGGGCAATGGCGTCTGCCCTCAGCCCCCAAACCAATA
AGCCATTCTGTATCTTCGGTTAACCTACGGTTTGGAGGAAGGACAACGATGAAGACTGTGGTGTGCAAGA
TGAACCCCATGCCAGACACAGCTTCCTGTGGCTCTGAAGTTAAAAAGTGGTGGACCAGACAGCTGACCGT
GGAGAGTGACGAGAGTGGAGATGACCTCCTGGATATTTAG

Translation (1739 aa):
MLKRKQSSRVEAQPVTDFGPDESLSDNADILWINKPWVHSLLRICAIISVISVCMNTPMTFEHYPPLQYV
TFTLDTLLMFLYTAEMIAKMHIRGIVKGDSSYVKDRWCVFDGFMVFCLWVSLVLQVFEIADIVDQMSPWG
MLRIPRPLIMIRAFRIYFRFELPRTRITNILKRSGEQIWSVSIFLLFFLLLYGILGVQMFGTFTYHCVVN
DTKPGNVTWNSLAIPDTHCSPELEEGYQCPPGFKCMDLEDLGLSRQELGYSGFNEIGTSIFTVYEASSQE
GWVFLMYRAIDSFPRWRSYFYFITLIFFLAWLVKNVFIAVIIETFAEIRVQFQQMWGTRSSTTSTATTQM
FHEDAAGGWQLVAVDVNKPQGRAPACLQKMMRSSVFHMFILSMVTVDVIVAASNYYKGENFRRQYDEFYL
AEVAFTVLFDLEALLKIWCLGFTGYISSSLHKFELLLVIGTTLHVYPDLYHSQFTYFQVLRVVRLIKISP
ALEDFVYKIFGPGKKLGSLVVFTASLLIVMSAISLQMFCFVEELDRFTTFPRAFMSMFQILTQEGWVDVM
DQTLNAVGHMWAPLVAIYFILYHLFATLILLSLFVAVILDNLELDEDLKKLKQLKQSEANADTKEKLPLR
LRIFEKFPNRPQMVKISKLPSDFTVPKIRESFMKQFIDRQQQDTCCLFRILPSTSSSSCDNPKKPTAEDN
KYIDQKLRKSVFSIRARNLLEKETAVTKILRACTRQRMLSGSFEGQPAKERSILSVQHHIRQERRSLRHG
SNSQRISRGKSLETLTQDHSNTVRYRNAQREDSEIKMIQEKKEQAEMKRKVQEEELRENHPYFDKPLFIV
GREHRFRNFCRVVVRARFNASKTDPVTGAVKNTKYHQLYDLLGLVTYLDWVMITVTICSCISMMFESPFR
RVMHAPTLQIAEYVFVIFMSIELNLKIMADGLFFTPTAVIRDFGGVMDIFIYLVSLIFLCWMPQNVPAES
GAQLLMVLRCLRPLRIFKLVPQMRKVVRELFSGFKEIFLVSILLLTLMLVFASFGVQLFAGKLAKCNDPN
IIRREDCNGIFRINVSVSKNLNLKLRPGEKKPGFWVPRVWANPRNFNFDNVGNAMLALFEVLSLKGWVEV
RDVIIHRVGPIHGIYIHVFVFLGCMIGLTLFVGVVIANFNENKGTALLTVDQRRWEDLKSRLKIAQPLHL
PPRPDNDGFRAKMYDITQHPFFKRTIALLVLAQSVLLSVKWDVDDPVTVPLATMSVVFTFIFVLEVTMKI
IAMSPAGFWQSRRNRYDLLVTSLGVVWVVLHFALLNAYTYMMGACVIVFRFFSICGKHVTLKMLLLTVVV
SMYKSFFIIVGMFLLLLCYAFAGVVLFGTVKYGENINRHANFSSAGKAITVLFRIVTGEDWNKIMHDCMV
QPPFCTPDEFTYWATDCGNYAGALMYFCSFYVIIAYIMLNLLVAIIVENFSLFYSTEEDQLLSYNDLRHF
QIIWNMVDDKREGVIPTFRVKFLLRLLRGRLEVDLDKDKLLFKHMCYEMERLHNGGDVTFHDVLSMLSYR
SVDIRKSLQLEELLAREQLEYTIEEEVAKQTIRMWLKKCLKRIRAKQQQSCSIIHSLRESQEQERSRLFL
NPPSIETTQPSEDSNANSQDHSMQPETSSQQQLLSPTLSDRGGSRQDAADTGKPQRKIGQWRLPSAPKPI
SHSVSSVNLRFGGRTTMKTVVCKMNPMPDTASCGSEVKKWWTRQLTVESDESGDDLLDI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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