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Report for CCDS36948.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36948.1 Public Mus musculus 14 Defb42 23 108 98 CCDS HistoryNCBI Gene:619548Re-query CCDS DB by CCDS ID:36948.1Re-query CCDS DB by GeneID:619548See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36948.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067990.7 ENSMUSP00000070629.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067990.7Link to Ensembl Protein Viewer:ENSMUSP00000070629.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000067990Re-query CCDS DB by Protein ID:ENSMUSP00000070629
Original member Current member EBI ENSMUST00000111203.1 ENSMUSP00000106834.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111203.1Link to Ensembl Protein Viewer:ENSMUSP00000106834.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111203Re-query CCDS DB by Protein ID:ENSMUSP00000106834
Original member NCBI NM_001034910.3 NP_001030082.1 Updated not alive Link to Nucleotide Sequence:NM_001034910.3Link to Protein Sequence:NP_001030082.1Re-query CCDS DB by Nucleotide ID:NM_001034910Re-query CCDS DB by Protein ID:NP_001030082
Current member NCBI NM_001034910.4 NP_001030082.1 Accepted alive Link to Nucleotide Sequence:NM_001034910.4Link to Protein Sequence:NP_001030082.1Re-query CCDS DB by Nucleotide ID:NM_001034910Re-query CCDS DB by Protein ID:NP_001030082Link to BLAST:NP_001030082.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001030082.1 75 Q8BVB5 75 100% 0 0

Chromosomal Locations for CCDS 36948.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 63047564 63047618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 63048228 63048400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (228 nt):
ATGAACCTGCGTCTTTCATGCTTACTGTTCATCCTGGTGACATCATTGCCTGCAGGTCGCTGTTCGATCG
GGAATAAGGGCATATCCTTTGAGACGTGCACCGCAATCGAAGGCTTGTGTTTCTTTGGTTGTAAGTTAGG
GTGGGTATGGATTGCCTACTGTAACAACATAATGTCCTGTTGTAGAAAGGATACCGATTTTGTACTTCCT
CAAACCAAAGGTATATGA

Translation (75 aa):
MNLRLSCLLFILVTSLPAGRCSIGNKGISFETCTAIEGLCFFGCKLGWVWIAYCNNIMSCCRKDTDFVLP
QTKGI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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