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Report for CCDS36856.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36856.2 Public Mus musculus 14 Colq 23 108 98 CCDS HistoryNCBI Gene:382864Re-query CCDS DB by CCDS ID:36856.2Re-query CCDS DB by GeneID:382864See the combined annotation on chromosome 14 in Sequence Viewer

Public Note for CCDS 36856.1
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation, transcript and protein data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 36856.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112027.8 ENSMUSP00000107658.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112027.8Link to Ensembl Protein Viewer:ENSMUSP00000107658.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112027Re-query CCDS DB by Protein ID:ENSMUSP00000107658
Original member NCBI NM_009937.2 NP_034067.2 Updated not alive Link to Nucleotide Sequence:NM_009937.2Link to Protein Sequence:NP_034067.2Re-query CCDS DB by Nucleotide ID:NM_009937Re-query CCDS DB by Protein ID:NP_034067
Current member NCBI NM_009937.3 NP_034067.2 Accepted alive Link to Nucleotide Sequence:NM_009937.3Link to Protein Sequence:NP_034067.2Re-query CCDS DB by Nucleotide ID:NM_009937Re-query CCDS DB by Protein ID:NP_034067Link to BLAST:NP_034067.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034067.2 457 O35348 457 100% 0 0

Chromosomal Locations for CCDS 36856.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 31524410 31524479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31525986 31526088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31528276 31528396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31528767 31528886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31529493 31529632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31535589 31535694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31539821 31539901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31543787 31543822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31543988 31544032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31544659 31544685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31545057 31545119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31547447 31547518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31549099 31549125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31549457 31549501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31552892 31552990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31553740 31553852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31577143 31577248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1374 nt):
ATGGTGGTCCTGAATCCAATGACTTTGGGAATTTATCTCCAACTCTTCTTCTGCTCCATCGTGTCTCAGC
CAACTTTCATCAACAGTGTGGTCCCAATCTCAGCAGCCCTTCCTGGCCTGGATCAGAAGAAGCGGGGCAG
CCACAAAGCATGCTGCCTACTCATGCCCCCACCGCCCCCACTCTTCCCACCGCCGTTCTTCAGAGGCAGC
CGGAGCCCGCTTCTCTCCCCAGACATGAAGAACCTTCTGGAACTTGAGGCGTCACCATCACCCTGCATTC
AAGGCTCGCTCGGCTCTCCTGGGCCCCCTGGGCCCCAGGGTCCACCTGGGCTTCCTGGCAAGACAGGACC
AAAGGGAGAAAAGGGGGACCTTGGCCGCCCAGGAAGGAAGGGTAGACCTGGACCCCCAGGTGTTCCTGGC
ATGCCTGGGCCCGTTGGCTGGCCAGGCCCTGAAGGACCCAGGGGTGAAAAAGGTGACCTGGGTATGATGG
GCCTGCCGGGGTCAAGAGGACCGATGGGCTCTAAGGGTTTCCCTGGATCCAGAGGGGAAAAGGGATCCAG
AGGTGAAAGGGGTGACTTGGGTCCCAAAGGAGAAAAGGGTTTCCCTGGGTTTCCTGGAATGCTGGGGCAG
AAAGGTGAAATGGGTCCAAAGGGAGAGTCTGGGCTGGCAGGACACCGAGGCCCCACAGGAAGACCAGGAA
AACGAGGCAAGCAGGGTCAGAAGGGAGACAGTGGAATTATGGGCCCACCAGGCAAGCCTGGGCCTTCTGG
TCAACCTGGCCGTCAAGGTCCTCCAGGGCCCCCAGGCCCACCATCTGCAGGACAACTTGTAATGGGACTC
AAAGGGGAAAGAGGATTTCCAGGGCCTCCAGGAAGATGCCTTTGCGGACCCCCTGTGAATGTGAATAACC
CCTCCTACGGGGACTCCATGTATGGGCGTGGCTCCCCTCGAGTTCCTGCGATTTTTGTGGTCAACAACCA
GGAAGAGCTTGAGAGGCTGAACACTCAGAATGCCATTGCCTTTCGAAGAGACCAGCGATCTTTGTACTTC
AAAGATAGCCTTGGCTGGCTCCCCATCCAGCTCACCCCTTTCTACCCTGTGGGTTACACCGTGAAGCAGC
CTGGCACCTGCGGGGATGGAGTCCTGCAGCCTGGGGAAGAGTGTGATGATGGTAATCCCGATGTGAGTGA
TGGCTGCATCGACTGTCATCGGGCCTACTGTGGAGACGGTTACCGGCACCAGGGCGTGGAGGACTGTGAC
GGCTCTGACTTTGGCTACCTGACATGCGAGACCTATCTCCCTGGATCATACGGAGACCTTCGGTGCACCC
AGTACTGCTCCATCGACTCCACACCCTGCCGCTACTTCACGTGA

Translation (457 aa):
MVVLNPMTLGIYLQLFFCSIVSQPTFINSVVPISAALPGLDQKKRGSHKACCLLMPPPPPLFPPPFFRGS
RSPLLSPDMKNLLELEASPSPCIQGSLGSPGPPGPQGPPGLPGKTGPKGEKGDLGRPGRKGRPGPPGVPG
MPGPVGWPGPEGPRGEKGDLGMMGLPGSRGPMGSKGFPGSRGEKGSRGERGDLGPKGEKGFPGFPGMLGQ
KGEMGPKGESGLAGHRGPTGRPGKRGKQGQKGDSGIMGPPGKPGPSGQPGRQGPPGPPGPPSAGQLVMGL
KGERGFPGPPGRCLCGPPVNVNNPSYGDSMYGRGSPRVPAIFVVNNQEELERLNTQNAIAFRRDQRSLYF
KDSLGWLPIQLTPFYPVGYTVKQPGTCGDGVLQPGEECDDGNPDVSDGCIDCHRAYCGDGYRHQGVEDCD
GSDFGYLTCETYLPGSYGDLRCTQYCSIDSTPCRYFT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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