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Report for CCDS3683.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3683.2 Public Homo sapiens 4 MCUB 24 110 108 CCDS HistoryNCBI Gene:55013Re-query CCDS DB by CCDS ID:3683.2Re-query CCDS DB by GeneID:55013See the combined annotation on chromosome 4 in Sequence Viewer

Public Note for CCDS 3683.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and homology data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 3683.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394650.7 ENSP00000378145.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000394650.7Link to Ensembl Protein Viewer:ENSP00000378145.4Re-query CCDS DB by Nucleotide ID:ENST00000394650Re-query CCDS DB by Protein ID:ENSP00000378145
Original member Current member NCBI NM_017918.5 NP_060388.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017918.5Link to Protein Sequence:NP_060388.2Re-query CCDS DB by Nucleotide ID:NM_017918Re-query CCDS DB by Protein ID:NP_060388Link to BLAST:NP_060388.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060388.2 336 Q9NWR8 336 100% 0 0

Chromosomal Locations for CCDS 3683.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 109560338 109560436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109659011 109659086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109660195 109660365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109664290 109664394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109682582 109682742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109684443 109684646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109685251 109685367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109687515 109687592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1011 nt):
ATGCTCCAGAGGGGCCTCTGGCCGTGGCGCACGCGGCTGCTGCCGACCCCTGGCACCTGGCGCCCAGCGC
GCCCGTGGCCGCTGCCGCCTCCGCCCCAGGTTTTGCGTGTGAAGCTGTGTGGAAATGTGAAATACTACCA
GTCACACCATTATAGTACCGTGGTGCCACCTGATGAAATAACAGTTATTTATAGACATGGCCTTCCCTTG
GTAACACTTACCTTGCCATCTAGAAAAGAACGTTGTCAATTCGTAGTCAAACCAATGTTGTCAACAGTTG
GTTCATTCCTTCAGGACCTACAAAATGAAGATAAGGGTATCAAAACTGCAGCCATCTTCACAGCAGATGG
CAACATGATTTCAGCTTCTACCTTGATGGATATTTTGCTAATGAATGATTTTAAACTTGTCATTAATAAA
ATAGCATATGATGTGCAGTGTCCAAAGAGAGAAAAACCAAGTAATGAGCACACTGCTGAGATGGAACACA
TGAAATCTTTGGTTCACAGACTATTTACAATCTTGCATTTAGAAGAGTCTCAGAAAAAGAGAGAGCACCA
TTTACTGGAGAAAATTGACCACCTGAAGGAACAGCTGCAGCCCCTTGAACAGGTGAAAGCTGGAATAGAA
GCTCATTCGGAAGCCAAAACCAGTGGACTCCTGTGGGCTGGATTGGCACTGCTGTCCATTCAGGGTGGGG
CACTGGCCTGGCTCACGTGGTGGGTGTACTCCTGGGATATCATGGAGCCAGTTACATACTTCATCACATT
TGCAAATTCTATGGTCTTTTTTGCATACTTTATAGTCACTCGACAGGATTATACTTACTCAGCTGTTAAG
AGTAGGCAATTTCTTCAGTTCTTCCACAAGAAATCAAAGCAACAGCACTTTGATGTGCAGCAATACAACA
AGTTAAAAGAAGACCTTGCTAAGGCTAAAGAATCCCTGAAACAGGCGCGTCATTCTCTCTGTTTGCAAAT
GCAAGTAGAAGAACTCAATGAAAAGAATTAA

Translation (336 aa):
MLQRGLWPWRTRLLPTPGTWRPARPWPLPPPPQVLRVKLCGNVKYYQSHHYSTVVPPDEITVIYRHGLPL
VTLTLPSRKERCQFVVKPMLSTVGSFLQDLQNEDKGIKTAAIFTADGNMISASTLMDILLMNDFKLVINK
IAYDVQCPKREKPSNEHTAEMEHMKSLVHRLFTILHLEESQKKREHHLLEKIDHLKEQLQPLEQVKAGIE
AHSEAKTSGLLWAGLALLSIQGGALAWLTWWVYSWDIMEPVTYFITFANSMVFFAYFIVTRQDYTYSAVK
SRQFLQFFHKKSKQQHFDVQQYNKLKEDLAKAKESLKQARHSLCLQMQVEELNEKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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