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Report for CCDS36748.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36748.1 Public Mus musculus 13 Bhmt 23 108 98 CCDS HistoryNCBI Gene:12116Re-query CCDS DB by CCDS ID:36748.1Re-query CCDS DB by GeneID:12116See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36748.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099309.5 ENSMUSP00000096912.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099309.5Link to Ensembl Protein Viewer:ENSMUSP00000096912.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000099309Re-query CCDS DB by Protein ID:ENSMUSP00000096912
Original member Current member NCBI NM_016668.3 NP_057877.1 Accepted alive Link to Nucleotide Sequence:NM_016668.3Link to Protein Sequence:NP_057877.1Re-query CCDS DB by Nucleotide ID:NM_016668Re-query CCDS DB by Protein ID:NP_057877Link to BLAST:NP_057877.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057877.1 407 O35490 407 100% 0 0

Chromosomal Locations for CCDS 36748.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 93617476 93617662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93620082 93620310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93621394 93621576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93624814 93624961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93625297 93625488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93627247 93627365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93633236 93633368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93637464 93637496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1224 nt):
ATGGCACCAGTTGCTGGCAAGAAGGCCAAGAAGGGGATCTTAGAACGCTTAAATGCCGGAGAAGTTGTGA
TTGGAGATGGAGGATTTGTCTTTGCACTGGAAAAGAGGGGCTATGTAAAGGCTGGACCCTGGACCCCAGA
AGCTGCCGTGGAGCATCCTGAGGCAGTTCGTCAGCTTCATCGGGAGTTCCTCAGAGCTGGATCGAACGTC
ATGCAGACCTTCACTTTCTATGCAAGTGAAGACAAGCTGGAAAACAGAGGAAACTATGTGGCAGAGAAGA
TTTCTGGGCAGAAAGTCAACGAAGCTGCTTGTGACATTGCACGGCAAGTGGCTGATGAAGGAGACGCTTT
GGTTGCAGGAGGCGTGAGCCAGACGCCTTCATACCTTAGCTGCAAGAGTGAGGTAGAAGTGAAAAAGATA
TTTCGCCAACAGCTAGAGGTGTTCATGAAGAAGAACGTGGACTTCCTCATTGCAGAGTATTTTGAACATG
TTGAAGAAGCCGTGTGGGCAGTGGAAGCCTTAAAAGCATCTGGTAAGCCCGTAGCAGCTACCATGTGCAT
TGGGCCCGAGGGAGATCTGCATGGCGTGCCCCCTGGAGAGTGTGCCGTGCGTCTGGTGAAAGCAGGCGCC
TCCATTGTCGGCGTGAACTGCCACTTCGACCCCAGCGTCAGCTTACAGACTGTGAAGCTCATGAAGGAGG
GTTTGGAGGCTGCGCGGTTGAAAGCTTACCTGATGAGCCAGCCCCTGGCCTACCATACCCCTGACTGTGG
CAAACAGGGATTTATTGATCTCCCAGAATTCCCCTTTGGATTGGAACCCCGAGTTGCCACTAGATGGGAT
ATTCAAAAATATGCCAGAGAGGCCTACAACCTGGGGGTTAGGTACATTGGCGGCTGCTGCGGATTTGAGC
CCTACCACATCAGGGCGATTGCAGAGGAGTTGGCCCCAGAAAGGGGATTTTTGCCACCGGCTTCAGAAAA
ACATGGCAGCTGGGGAAGTGGTTTGGACATGCACACCAAACCCTGGATCAGAGCAAGGGCCAGAAAGGAA
TACTGGCAGAATCTGCGAATAGCTTCCGGCAGGCCGTACAACCCTTCCATGTCCCGGCCAGATGCTTGGG
GCGTGACTAAGGGAGCAGCCGAGCTGATGCAGCAGAAGGAGGCCACTACTGAGCAGCAGCTGAGAGAGCT
CTTTGAAAAACAAAAATTCAAGTCTGCACAGTAG

Translation (407 aa):
MAPVAGKKAKKGILERLNAGEVVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLHREFLRAGSNV
MQTFTFYASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDALVAGGVSQTPSYLSCKSEVEVKKI
FRQQLEVFMKKNVDFLIAEYFEHVEEAVWAVEALKASGKPVAATMCIGPEGDLHGVPPGECAVRLVKAGA
SIVGVNCHFDPSVSLQTVKLMKEGLEAARLKAYLMSQPLAYHTPDCGKQGFIDLPEFPFGLEPRVATRWD
IQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAPERGFLPPASEKHGSWGSGLDMHTKPWIRARARKE
YWQNLRIASGRPYNPSMSRPDAWGVTKGAAELMQQKEATTEQQLRELFEKQKFKSAQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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